View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21580_low_48 (Length: 259)

Name: NF21580_low_48
Description: NF21580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21580_low_48
NF21580_low_48
[»] chr5 (16 HSPs)
chr5 (1-242)||(10603813-10604054)
chr5 (1-161)||(10600997-10601157)
chr5 (1-240)||(10580071-10580307)
chr5 (164-242)||(10600149-10600227)
chr5 (34-240)||(10610773-10610979)
chr5 (33-240)||(10747954-10748161)
chr5 (65-228)||(7192080-7192243)
chr5 (74-240)||(10661065-10661231)
chr5 (58-170)||(10741663-10741775)
chr5 (31-170)||(10564160-10564299)
chr5 (61-220)||(10653166-10653325)
chr5 (15-224)||(10557999-10558208)
chr5 (58-103)||(10764097-10764142)
chr5 (60-240)||(10717864-10718044)
chr5 (33-215)||(9837267-9837449)
chr5 (136-240)||(19606907-19607011)
[»] chr6 (3 HSPs)
chr6 (33-104)||(12947843-12947914)
chr6 (33-242)||(12931340-12931549)
chr6 (33-104)||(12957277-12957348)
[»] chr2 (1 HSPs)
chr2 (33-104)||(17924342-17924413)


Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 10604054 - 10603813
Alignment:
Q  1 tcaccaatagttccaggaatctccccacacaaatgattctgagagacatctaaccaatcaatattttttagcatacccatttcttttggtaagctaccac 100  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  10604054 tcaccaatagttccaggaatctccccacacaaatgattttcagagacatctaaccaatcaatattttttagcatacccacttcttttggtaagctaccac 10603955  T
Q  101 tcaatttgtttcgtgacaagtcaagtaaatttgtcaaagaggaaatactaaaaatctctaaaggtatggaccctctaaggttgttttgtgaaaagtctag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  10603954 tcaatttgtttcgtgacaagtcaagtaaatttgtcaaagaggaaatactaaaaatatctaaaggtatggaccctctaaggttgttttgtgaaaagtctag 10603855  T
Q  201 gtattgtaacttttgacaatttcctatatttggaggaatact 242  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  10603854 gtattgtaacttttgacaatttcctatatttggaggaatact 10603813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 10601157 - 10600997
Alignment:
Q  1 tcaccaatagttccaggaatctccccacacaaatgattctgagagacatctaaccaatcaatattttttagcatacccatttcttttggtaagctaccac 100  Q
    |||||||| ||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||| |    
T  10601157 tcaccaatggttccagtaatctccccacacaaatgattctcagagacatctagccaatcaatattttttagcatacccacttcttttgttaagctacctc 10601058  T
Q  101 tcaatttgtttcgtgacaagtcaagtaaatttgtcaaagaggaaatactaaaaatctctaa 161  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10601057 tcaatatgtttcgtgacaagtcaagtacatttgtcaaagaggaaatactaaaaatctctaa 10600997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 10580307 - 10580071
Alignment:
Q  1 tcaccaatagttccaggaatctccccacacaaatgattctgagagacatctaaccaatcaatattttttagcatacccatttcttttggtaagctaccac 100  Q
    |||||||| |||||| |||| |||||| | ||| |||||| ||||||||||| ||  |||||| ||||||||||||||| |||||| ||||| ||| ||     
T  10580307 tcaccaatggttccaagaatgtccccaaataaacgattctcagagacatctaccccctcaatactttttagcatacccacttctttaggtaatctatcat 10580208  T
Q  101 tcaatttgtttcgtgacaagtcaagtaaatttgtcaaagaggaaatactaaaaatctctaaaggtatggaccctctaaggttgttttgtgaaaagtctag 200  Q
    ||||  |||||||||| |||||||||   |||| ||||| |||||||||||| ||||||||| ||||||| ||||||||||  ||||||||||||| |||    
T  10580207 tcaacatgtttcgtgaaaagtcaagt---tttgacaaaggggaaatactaaagatctctaaacgtatggatcctctaaggtcattttgtgaaaagtttag 10580111  T
Q  201 gtattgtaacttttgacaatttcctatatttggaggaata 240  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  10580110 gtattctaacttttgacaatttcctatatttggaggaata 10580071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 164 - 242
Target Start/End: Complemental strand, 10600227 - 10600149
Alignment:
Q  164 gtatggaccctctaaggttgttttgtgaaaagtctaggtattgtaacttttgacaatttcctatatttggaggaatact 242  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  10600227 gtatggaccctcttaggttgttttgtgaaaagtctaggtattgtaacttttgacaatttcctatatttagaggaatact 10600149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 34 - 240
Target Start/End: Complemental strand, 10610979 - 10610773
Alignment:
Q  34 tgattctgagagacatctaaccaatcaatattttttagcatacccatttcttttggtaagctaccactcaatttgtttcgtgacaagtcaagtaaatttg 133  Q
    ||||||| ||| ||||||| |  || |||||||||||||||||||| |||| |||||||||||||||||||   |||  | |||||||  | ||||||||    
T  10610979 tgattctcagatacatctagcatattaatattttttagcatacccacttctcttggtaagctaccactcaaagagttatgcgacaagttcaataaatttg 10610880  T
Q  134 tcaaagaggaaatactaaaaatctctaaaggtatggaccctctaaggttgttttgtgaaaagtctaggtattgtaacttttgacaatttcctatatttgg 233  Q
      ||| |  ||| | |||||||||||||||||||||| || ||||| || || || ||||  ||||||||||||||||||||||||||||||||  ||||    
T  10610879 ataaataaaaaagattaaaaatctctaaaggtatggatccactaagtttattatgagaaagatctaggtattgtaacttttgacaatttcctatgcttgg 10610780  T
Q  234 aggaata 240  Q
    |||||||    
T  10610779 aggaata 10610773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 33 - 240
Target Start/End: Original strand, 10747954 - 10748161
Alignment:
Q  33 atgattctgagagacatctaaccaatcaatattttttagcatacccatttcttttggtaagctaccactcaatttgtttcgtgacaagtcaagtaaattt 132  Q
    |||||||| ||||||||||| |||||||||||||||||| | ||||| |||| |||||||||||||||||||   |||  |||| ||||  | ||| |||    
T  10747954 atgattctcagagacatctagccaatcaatattttttagtaaacccacttctcttggtaagctaccactcaaaaagttatgtgataagttcaataagttt 10748053  T
Q  133 gtcaaagaggaaatactaaaaatctctaaaggtatggaccctctaaggttgttttgtgaaaagtctaggtattgtaacttttgacaatttcctatatttg 232  Q
    |  |||||  |||||  |||||||||| |||||||||  || ||||| || || || ||||  ||||||||||||||||||||||||||| ||||  |||    
T  10748054 gataaagaaaaaatatgaaaaatctctgaaggtatggttccactaagcttattatgagaaagatctaggtattgtaacttttgacaattttctatgcttg 10748153  T
Q  233 gaggaata 240  Q
    ||||||||    
T  10748154 gaggaata 10748161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 65 - 228
Target Start/End: Complemental strand, 7192243 - 7192080
Alignment:
Q  65 tttttagcatacccatttcttttggtaagctaccactcaatttgtttcgtgacaagtcaagtaaatttgtcaaagaggaaatactaaaaatctctaaagg 164  Q
    ||||||||||||||| |||| |||||| |||||||||||||  ||||| ||||||||  ||||| ||||  || || |||| ||| ||||  ||||| ||    
T  7192243 tttttagcatacccacttctcttggtaggctaccactcaatgagtttcttgacaagttcagtaagtttgataacgaagaaagactgaaaacttctaaggg 7192144  T
Q  165 tatggaccctctaaggttgttttgtgaaaagtctaggtattgtaacttttgacaatttcctata 228  Q
    |||||  |||||||| |||||||||| || ||| ||||||||||||||||  || |||||||||    
T  7192143 tatggttcctctaagattgttttgtgcaaggtccaggtattgtaactttttgcagtttcctata 7192080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 74 - 240
Target Start/End: Original strand, 10661065 - 10661231
Alignment:
Q  74 tacccatttcttttggtaagctaccactcaatttgtttcgtgacaagtcaagtaaatttgtcaaagaggaaatactaaaaatctctaaaggtatggaccc 173  Q
    |||||| |||| |||||| |||||||||||||  ||||  ||||||||  ||||| ||||| |||||||||| |||||| | || |   |||||||  ||    
T  10661065 tacccacttctattggtaggctaccactcaatgagttttttgacaagttcagtaagtttgttaaagaggaaagactaaagacctttttgggtatggttcc 10661164  T
Q  174 tctaaggttgttttgtgaaaagtctaggtattgtaacttttgacaatttcctatatttggaggaata 240  Q
    ||||||  |||||||||||| ||||||| |||||| |||||| |||| ||||||  ||| |||||||    
T  10661165 tctaagaatgttttgtgaaaggtctagggattgtagcttttggcaatgtcctatgcttgaaggaata 10661231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 170
Target Start/End: Original strand, 10741663 - 10741775
Alignment:
Q  58 tcaatattttttagcatacccatttcttttggtaagctaccactcaatttgtttcgtgacaagtcaagtaaatttgtcaaagaggaaatactaaaaatct 157  Q
    ||||||||||||| |||||||| |||| |||||| ||||||||||||  ||||  |||||||||| | ||| ||||  ||||| |||| |||||||| ||    
T  10741663 tcaatattttttaacatacccacttctcttggtatgctaccactcaaagtgttatgtgacaagtccaataagtttgataaagaagaaagactaaaaacct 10741762  T
Q  158 ctaaaggtatgga 170  Q
    ||| |||||||||    
T  10741763 ctagaggtatgga 10741775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 31 - 170
Target Start/End: Complemental strand, 10564299 - 10564160
Alignment:
Q  31 aaatgattctgagagacatctaaccaatcaatattttttagcatacccatttcttttggtaagctaccactcaatttgtttcgtgacaagtcaagtaaat 130  Q
    |||||||||| ||||||||||||    |||| ||||||||  | ||||| |||| |||||||||||||||||||   |||  |||||||||  | ||| |    
T  10564299 aaatgattcttagagacatctaatatttcaagattttttaagacacccagttctcttggtaagctaccactcaaagagttatgtgacaagttcaataagt 10564200  T
Q  131 ttgtcaaagaggaaatactaaaaatctctaaaggtatgga 170  Q
    |||| ||||| |||| |||||||| ||||| |||||||||    
T  10564199 ttgttaaagaagaaagactaaaaacctctagaggtatgga 10564160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 61 - 220
Target Start/End: Original strand, 10653166 - 10653325
Alignment:
Q  61 atattttttagcatacccatttcttttggtaagctaccactcaatttgtttcgtgacaagtcaagtaaatttgtcaaagaggaaatactaaaaatctcta 160  Q
    |||||| |||||||||||| |||| | |||||||||||||||||| ||||   |||||| |  ||||  ||||| |  ||||||| ||| |||| |||||    
T  10653166 atatttcttagcatacccacttctctcggtaagctaccactcaatgtgttatttgacaaattcagtatgtttgttagggaggaaagacttaaaacctcta 10653265  T
Q  161 aaggtatggaccctctaaggttgttttgtgaaaagtctaggtattgtaacttttgacaat 220  Q
      |||||||  ||||  ||  |||||||||||| |||||||||||||| |||||| ||||    
T  10653266 tgggtatggttcctcggagaatgttttgtgaaaggtctaggtattgtagcttttggcaat 10653325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 10558208 - 10557999
Alignment:
Q  15 aggaatctccccacacaaatgattctgagagacatctaaccaatcaatattttttagcatacccatttcttttggtaagctaccactcaatttgtttcgt 114  Q
    |||||| || ||| |||||| ||||| ||||| ||||| |  || ||||||||||||| |||||| |||    | || | | |||||||||  |||| ||    
T  10558208 aggaatttcaccagacaaattattctcagagaaatctagcttattaatattttttagcctacccacttcaacagataggtttccactcaatgagttttgt 10558109  T
Q  115 gacaagtcaagtaaatttgtcaaagaggaaatactaaaaatctctaaaggtatggaccctctaaggttgttttgtgaaaagtctaggtattgtaactttt 214  Q
    |||||||| ||| | ||||  || |||||||||||||||| ||| || |||||||  |||||||  || |||| ||||| || |||||  ||||| || |    
T  10558108 gacaagtccagtgagtttgataatgaggaaatactaaaaacctccaagggtatggttcctctaaaattattttttgaaaggtttaggtgatgtaaattgt 10558009  T
Q  215 gacaatttcc 224  Q
    ||||||||||    
T  10558008 gacaatttcc 10557999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 10764097 - 10764142
Alignment:
Q  58 tcaatattttttagcatacccatttcttttggtaagctaccactca 103  Q
    ||||||||||||| |||||||| |||| ||||||||||||||||||    
T  10764097 tcaatattttttaacatacccacttctcttggtaagctaccactca 10764142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 240
Target Start/End: Original strand, 10717864 - 10718044
Alignment:
Q  60 aatattttttagcatacccatttcttttggtaagctaccactcaatttgtttcgtgacaagtcaagtaaatttgtcaaagaggaaatactaaaaatctct 159  Q
    ||||||||||| ||||| || |||| |||||||||||||||||||   |||  |||||||||| | ||  ||||  ||| |  ||| | |||||| ||||    
T  10717864 aatattttttaacatactcacttctcttggtaagctaccactcaaagagttatgtgacaagtccaatatttttgataaataaaaaagattaaaaacctct 10717963  T
Q  160 aaaggtatggaccctctaaggttgttttgtgaaaagtctaggtattgtaacttttgacaatttcctatatttggaggaata 240  Q
    | ||||||||  || ||||   | || || ||||  ||||| |||||||| |||||||| ||||||||| |||||||||||    
T  10717964 acaggtatggttccactaaacctattatgagaaagatctagatattgtaaattttgacagtttcctatacttggaggaata 10718044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 215
Target Start/End: Original strand, 9837267 - 9837449
Alignment:
Q  33 atgattctgagagacatctaaccaatcaatattttttagcatacccatttcttttggtaagctaccactcaatttgtttcgtgacaagtcaagtaaattt 132  Q
    |||||| | ||||||||||| |  || |||||||||||||| ||||| ||| |  ||||| ||||||||||||   ||| |||| ||||| | |    ||    
T  9837267 atgattttcagagacatctagcttatgaatattttttagcaaacccacttcatcaggtaaactaccactcaatgaattttgtgataagtccaatcccgtt 9837366  T
Q  133 gtcaaagaggaaatactaaaaatctctaaaggtatggaccctctaaggttgttttgtgaaaagtctaggtattgtaacttttg 215  Q
    || || ||  ||||||||||||| ||||| |||||||  |||  |||||||||||| |||| || ||| ||||||||| ||||    
T  9837367 gttaaggaaaaaatactaaaaatttctaagggtatggctccttgaaggttgttttgcgaaaggtttagatattgtaacatttg 9837449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 240
Target Start/End: Original strand, 19606907 - 19607011
Alignment:
Q  136 aaagaggaaatactaaaaatctctaaaggtatggaccctctaaggttgttttgtgaaaagtctaggtattgtaacttttgacaatttcctatatttggag 235  Q
    |||||||||| || ||||| |||||| |||||||  || ||||| || |||||  ||| | ||| | |||||||||||||||| ||||||||  ||| ||    
T  19606907 aaagaggaaagacgaaaaacctctaagggtatggttccactaagattattttgaaaaaggactatggattgtaacttttgacagtttcctatgcttgaag 19607006  T
Q  236 gaata 240  Q
    |||||    
T  19607007 gaata 19607011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 33 - 104
Target Start/End: Complemental strand, 12947914 - 12947843
Alignment:
Q  33 atgattctgagagacatctaaccaatcaatattttttagcatacccatttcttttggtaagctaccactcaa 104  Q
    |||||||| ||||||||||||    ||||||||||||| |||||||| |||| |||||||||||||||||||    
T  12947914 atgattctcagagacatctaatgcttcaatattttttaacatacccacttctcttggtaagctaccactcaa 12947843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 242
Target Start/End: Complemental strand, 12931549 - 12931340
Alignment:
Q  33 atgattctgagagacatctaaccaatcaatattttttagcatacccatttcttttggtaagctaccactcaatttgtttcgtgacaagtcaagtaaattt 132  Q
    |||||||| ||||||||||||    ||||||||||||| |||||||| |||| |||||||||||||||| ||   |||  |||||||||  | |||  ||    
T  12931549 atgattctcagagacatctaatgcttcaatattttttaacatacccacttctcttggtaagctaccacttaaagagttatgtgacaagttcaataagatt 12931450  T
Q  133 gtcaaagaggaaatactaaaaatctctaaaggtatggaccctctaaggttgttttgtgaaaagtctaggtattgtaacttttgacaatttcctatatttg 232  Q
    |  |||||  ||| | | |||| ||||| ||||||||  |||||||| || || || ||||  || ||  ||||||| |||||||| ||||||||  |||    
T  12931449 gataaagaaaaaagatttaaaacctctacaggtatggttcctctaagcttattatgagaaagatcaagagattgtaaattttgacagtttcctatgcttg 12931350  T
Q  233 gaggaatact 242  Q
    ||||||||||    
T  12931349 gaggaatact 12931340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 104
Target Start/End: Complemental strand, 12957348 - 12957277
Alignment:
Q  33 atgattctgagagacatctaaccaatcaatattttttagcatacccatttcttttggtaagctaccactcaa 104  Q
    |||||||| ||||||||||||    ||||||||||||| |||||||| |||| |||||||| |||| |||||    
T  12957348 atgattctcagagacatctaaatcttcaatattttttaacatacccacttctgttggtaaggtaccgctcaa 12957277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 104
Target Start/End: Original strand, 17924342 - 17924413
Alignment:
Q  33 atgattctgagagacatctaaccaatcaatattttttagcatacccatttcttttggtaagctaccactcaa 104  Q
    |||||||| ||||||||||||    ||||||||||||| ||||| || |||| |||||||| ||||||||||    
T  17924342 atgattctcagagacatctaattcttcaatattttttaacatactcacttctcttggtaaggtaccactcaa 17924413  T

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