View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21580_low_49 (Length: 258)
Name: NF21580_low_49
Description: NF21580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21580_low_49 |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 23 - 182
Target Start/End: Complemental strand, 42529595 - 42529436
Alignment:
| Q |
23 |
atactatcttgcgcagagtaggttaggaccttgacattaacatcatcaaattttacaacaaaagactctgactgaaaaagatcaaaaccggcatccggct |
122 |
Q |
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| T |
42529595 |
atactatcttgcgcagagtaggttaagaccttgacattaacatcatcaaattttacaacaaaagaatctgactgaaaaagatcaaaaccggcatccggct |
42529496 |
T |
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| Q |
123 |
tggccctccttatgtattcaatacttgttgatctgtatttccaagaactgagattcccat |
182 |
Q |
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| T |
42529495 |
tggccctccttgtgtattcaatacttgttgatctgtatttccaagaactgagattcccat |
42529436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 19 - 161
Target Start/End: Complemental strand, 42535321 - 42535179
Alignment:
| Q |
19 |
gaatatactatcttgcgcagagtaggttaggaccttgacattaacatcatcaaattttacaacaaaagactctgactgaaaaagatcaaaaccggcatcc |
118 |
Q |
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| T |
42535321 |
gaatatactatcttgcgcagagtaggttaggaccttggcattaacatcatcaaatttcacaacaaaagactctgactgaaaaagatcaaaaccggcatcc |
42535222 |
T |
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| Q |
119 |
ggcttggccctccttatgtattcaatacttgttgatctgtatt |
161 |
Q |
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| T |
42535221 |
ggcttggccctccttatgtcttcaatgcgtgttgatctgtatt |
42535179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 245
Target Start/End: Complemental strand, 42535149 - 42535104
Alignment:
| Q |
200 |
gtaataaggcagtcattgttcttgttgtagaagaggctcttgatga |
245 |
Q |
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| T |
42535149 |
gtaataagtgagtcattgttcttgttgtagaagagtctcctgatga |
42535104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 237
Target Start/End: Complemental strand, 27821993 - 27821896
Alignment:
| Q |
140 |
tcaatacttgttgatctgtatttccaagaactgagattcccatgaccgtaatcagacagcgtaataaggcagtcattgttcttgttgtagaagaggct |
237 |
Q |
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| T |
27821993 |
tcaatccttgttgatctgcacttcaaagaactgaaattctcagaagcataaacagacactgtaataagtgagtcattgttcttgttgtagaagaggct |
27821896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 139
Target Start/End: Complemental strand, 27822138 - 27822082
Alignment:
| Q |
83 |
aaagactctgactgaaaaagatcaaaaccggcatccggcttggccctccttatgtat |
139 |
Q |
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| T |
27822138 |
aaagactcggactggaaaagaggaaaaccagcatccggcttggccctctttatgtat |
27822082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 27822207 - 27822159
Alignment:
| Q |
26 |
ctatcttgcgcagagtaggttaggaccttgacattaacatcatcaaatt |
74 |
Q |
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| T |
27822207 |
ctatcctgcgcagagtatgttaggacctttgcattaacatcatcaaatt |
27822159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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