View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21580_low_5 (Length: 712)
Name: NF21580_low_5
Description: NF21580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21580_low_5 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 495; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 206 - 712
Target Start/End: Complemental strand, 31852941 - 31852435
Alignment:
| Q |
206 |
ccttgttgaattactatagggagaggaataattgggttggtgatggaagataaaaccgagagatttaaccttgaagctggtgacattatgagggtacctg |
305 |
Q |
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| T |
31852941 |
ccttgttgaattactatagggagaggaataattgggttggtgatggaagataaaaccgagagatttaaccttgaagctggtgacattatgagggtacctg |
31852842 |
T |
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| Q |
306 |
caggaacacctatgtacttggttaatagagatgagaatgagaagctttttgtggcagcattgcacatgccaccttcctctgcctctgctccagtaaatct |
405 |
Q |
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| T |
31852841 |
caggaacacctatgtacttggttaatagagatgagaatgagaagctttttgttgcagcattgcacatgccaccttcctctgcctctgctccagtaaatct |
31852742 |
T |
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| Q |
406 |
tgaggttacaacttctaacaacattatttgatctattattacatgtgacactagcaatcttaagggacatgattaaatgtgtgacatacatgtattggtg |
505 |
Q |
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| T |
31852741 |
tgaggttacaacttctaacaacattatttgatctattattacatgtgacactagcaatcttaagggacatgattaaatgtgtgacatacatgtattggtg |
31852642 |
T |
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| Q |
506 |
caggcattttttgggcctgcagggcgagacccagaatcagtcctcacagcattcagctccaaagtgctccaagcagcattcaaggtagagtatacccttc |
605 |
Q |
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| T |
31852641 |
caggcattttttgggcctgcagggcgagacccagaatcagtcctcacagcattcagctccaaagtgctccaagcagcattcaaggtagagtatacccttc |
31852542 |
T |
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| Q |
606 |
tataatcaaatataataattttgcttttctaaattttcctaatttggtttattaattttgcacttgtacttgacaacaaacagagtccaaaagggaagtt |
705 |
Q |
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| T |
31852541 |
tataatcaaatataataattttgcttttctaaattttcctaatttggtttattaattttgtacttgtacctgacaacaaacagagtccaaaagggaagtt |
31852442 |
T |
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| Q |
706 |
agaaagt |
712 |
Q |
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| T |
31852441 |
agaaagt |
31852435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 31853146 - 31853006
Alignment:
| Q |
1 |
aaaatcaaagctgctcagaaactttgagaattatggtttgaccattttagaagctaaaggacatgcttttgtttcaccacaccactttgattctgaggtt |
100 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31853146 |
aaaatcaaagctgcttagaaactttgagaattatggtttgaccattttagaagctaaaggacatgcttttgtttcaccacaccactttgattctgaggtt |
31853047 |
T |
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| Q |
101 |
attttcttcaacgtcaagggtatgtattaaaaaacaaccaa |
141 |
Q |
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| T |
31853046 |
attttcttcaacgtcaagggtatgtattaaaaaacaaccaa |
31853006 |
T |
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