View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21580_low_51 (Length: 250)

Name: NF21580_low_51
Description: NF21580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21580_low_51
NF21580_low_51
[»] chr3 (19 HSPs)
chr3 (30-242)||(28001869-28002078)
chr3 (178-242)||(28147378-28147442)
chr3 (182-242)||(28053315-28053375)
chr3 (182-242)||(28063740-28063800)
chr3 (178-242)||(28081558-28081622)
chr3 (178-242)||(28183579-28183643)
chr3 (12-125)||(17746735-17746848)
chr3 (12-125)||(19048055-19048168)
chr3 (178-242)||(27918187-27918251)
chr3 (178-242)||(28482214-28482278)
chr3 (178-237)||(28131762-28131821)
chr3 (178-242)||(17746548-17746612)
chr3 (178-242)||(19047868-19047932)
chr3 (178-242)||(28511026-28511090)
chr3 (1-60)||(28053086-28053145)
chr3 (1-60)||(28063511-28063570)
chr3 (57-128)||(28183391-28183462)
chr3 (178-238)||(27974362-27974422)
chr3 (76-128)||(28147205-28147257)
[»] chr7 (1 HSPs)
chr7 (178-242)||(8693714-8693778)
[»] scaffold0257 (2 HSPs)
scaffold0257 (178-242)||(17164-17229)
scaffold0257 (53-125)||(16969-17041)


Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 30 - 242
Target Start/End: Original strand, 28001869 - 28002078
Alignment:
Q  30 atagtgagtttgaatcgacattctagtatattaaatatctccacaaccttttatcaactttgttgtatttacatgactttgttatttttattttatgcag 129  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||   ||||| |||||||||||||||||||||||||| |||||||||||||    
T  28001869 atagtgagtttgaatcgacactctagtatattaaatatctccacaaccttt---caactctgttgtatttacatgactttgttattcttattttatgcag 28001965  T
Q  130 gaatcgggtgggaatgtggaacattttcgcgctttagaaagtcttaaggaaataaatgaacaacaaatgaacttagctttggaagttattgatttggatg 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||  ||    
T  28001966 gaatcgggtgggaatgtggaacattttcgcgctttagaaagtcttaaggaaataaatgaacaacaaatgaacttagctttgaaaattattgaattgcttg 28002065  T
Q  230 ttctgcctatgat 242  Q
    |||||||||||||    
T  28002066 ttctgcctatgat 28002078  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 178 - 242
Target Start/End: Original strand, 28147378 - 28147442
Alignment:
Q  178 gaaataaatgaacaacaaatgaacttagctttggaagttattgatttggatgttctgcctatgat 242  Q
    |||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  28147378 gaaataaatgaacagcaaatgaacttagctttggaagacattgatttggatgttctgcctatgat 28147442  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 182 - 242
Target Start/End: Original strand, 28053315 - 28053375
Alignment:
Q  182 taaatgaacaacaaatgaacttagctttggaagttattgatttggatgttctgcctatgat 242  Q
    |||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  28053315 taaatgaacatcaaatgaacttagctttgaaagtcattgatttggatgttctgcctatgat 28053375  T

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Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 182 - 242
Target Start/End: Original strand, 28063740 - 28063800
Alignment:
Q  182 taaatgaacaacaaatgaacttagctttggaagttattgatttggatgttctgcctatgat 242  Q
    |||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  28063740 taaatgaacatcaaatgaacttagctttgaaagtcattgatttggatgttctgcctatgat 28063800  T

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Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 178 - 242
Target Start/End: Original strand, 28081558 - 28081622
Alignment:
Q  178 gaaataaatgaacaacaaatgaacttagctttggaagttattgatttggatgttctgcctatgat 242  Q
    ||||||||||||||  ||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  28081558 gaaataaatgaacagaaaatgaacttagctttgaaagtcattgatttggatgttctgcctatgat 28081622  T

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Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 178 - 242
Target Start/End: Original strand, 28183579 - 28183643
Alignment:
Q  178 gaaataaatgaacaacaaatgaacttagctttggaagttattgatttggatgttctgcctatgat 242  Q
    |||||||||||||  ||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  28183579 gaaataaatgaacggcaaatgaacttagctttggaagacattgatttggatgttctgcctatgat 28183643  T

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Target: chr3; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 125
Target Start/End: Complemental strand, 17746848 - 17746735
Alignment:
Q  12 gtgtctaagtagagagaaatagtgagtttgaatcgacattctagtatattaaatatctccacaaccttttat-caactttgttgtatttacatgactttg 110  Q
    |||||||||||||||||||  ||||||||||||| ||| ||| |||||| |||||||| |||||||||||||  | || | ||||| ||||| |||||||    
T  17746848 gtgtctaagtagagagaaactgtgagtttgaatcaacactctcgtatatcaaatatcttcacaaccttttatatatctctattgtacttaca-gactttg 17746750  T
Q  111 ttatttttattttat 125  Q
    ||||| |||||||||    
T  17746749 ttattcttattttat 17746735  T

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Target: chr3; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 125
Target Start/End: Complemental strand, 19048168 - 19048055
Alignment:
Q  12 gtgtctaagtagagagaaatagtgagtttgaatcgacattctagtatattaaatatctccacaaccttttat-caactttgttgtatttacatgactttg 110  Q
    |||||||||||||||||||  ||||||||||||| ||| ||| |||||| |||||||| |||||||||||||  | || | ||||| ||||| |||||||    
T  19048168 gtgtctaagtagagagaaactgtgagtttgaatcaacactctcgtatatcaaatatcttcacaaccttttatatatctctattgtacttaca-gactttg 19048070  T
Q  111 ttatttttattttat 125  Q
    ||||| |||||||||    
T  19048069 ttattcttattttat 19048055  T

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Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 242
Target Start/End: Original strand, 27918187 - 27918251
Alignment:
Q  178 gaaataaatgaacaacaaatgaacttagctttggaagttattgatttggatgttctgcctatgat 242  Q
    ||||||||||||||||||||||| |||| ||||||| | ||| ||||| ||||||||||||||||    
T  27918187 gaaataaatgaacaacaaatgaaattaggtttggaattcatttatttgaatgttctgcctatgat 27918251  T

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Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 28482278 - 28482214
Alignment:
Q  178 gaaataaatgaacaacaaatgaacttagctttggaagttattgatttggatgttctgcctatgat 242  Q
    |||||||||||||||||| ||| |||||||||| |||  ||||||||| ||||||||||||||||    
T  28482278 gaaataaatgaacaacaactgagcttagctttgaaagaaattgatttgaatgttctgcctatgat 28482214  T

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Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 178 - 237
Target Start/End: Original strand, 28131762 - 28131821
Alignment:
Q  178 gaaataaatgaacaacaaatgaacttagctttggaagttattgatttggatgttctgcct 237  Q
    |||||||||||||| |||||||||||||||||| |||  ||||||||||||||| |||||    
T  28131762 gaaataaatgaacagcaaatgaacttagctttgaaagacattgatttggatgttttgcct 28131821  T

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Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 17746612 - 17746548
Alignment:
Q  178 gaaataaatgaacaacaaatgaacttagctttggaagttattgatttggatgttctgcctatgat 242  Q
    |||| ||||||||| ||||||||||||||||||||||  |||  ||||| |||||||||||||||    
T  17746612 gaaagaaatgaacagcaaatgaacttagctttggaagaaattattttgggtgttctgcctatgat 17746548  T

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Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 19047932 - 19047868
Alignment:
Q  178 gaaataaatgaacaacaaatgaacttagctttggaagttattgatttggatgttctgcctatgat 242  Q
    |||| ||||||||| ||||||||||||||||||||||  |||  ||||| |||||||||||||||    
T  19047932 gaaagaaatgaacagcaaatgaacttagctttggaagaaattattttgggtgttctgcctatgat 19047868  T

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Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 28511090 - 28511026
Alignment:
Q  178 gaaataaatgaacaacaaatgaacttagctttggaagttattgatttggatgttctgcctatgat 242  Q
    |||||||||||||||||| ||| |||||||||| |||  ||||||||| ||||| ||||||||||    
T  28511090 gaaataaatgaacaacaactgagcttagctttgaaagacattgatttgaatgttttgcctatgat 28511026  T

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Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 28053086 - 28053145
Alignment:
Q  1 ttggacatggcgtgtctaagtagagagaaatagtgagtttgaatcgacattctagtatat 60  Q
    |||||||||||||||||||||   ||||||| ||||||||||||| ||| ||||||||||    
T  28053086 ttggacatggcgtgtctaagtctggagaaattgtgagtttgaatcaacactctagtatat 28053145  T

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Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 28063511 - 28063570
Alignment:
Q  1 ttggacatggcgtgtctaagtagagagaaatagtgagtttgaatcgacattctagtatat 60  Q
    |||||||||||||||||||||   ||||||| ||||||||||||| ||| ||||||||||    
T  28063511 ttggacatggcgtgtctaagtctggagaaattgtgagtttgaatcaacactctagtatat 28063570  T

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Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 128
Target Start/End: Original strand, 28183391 - 28183462
Alignment:
Q  57 atattaaatatctccacaaccttttatcaactttgttgtatttacatgactttgttatttttattttatgca 128  Q
    |||| ||||||||||||| ||| |||||| || | ||||| |||||  ||||||||||| ||||||||||||    
T  28183391 atatcaaatatctccacagcctattatcatctctattgtacttacagaactttgttattcttattttatgca 28183462  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 27974362 - 27974422
Alignment:
Q  178 gaaataaatgaacaacaaatgaacttagctttggaagttattgatttggatgttctgccta 238  Q
    |||||||||||||| ||||||| || || |||||||   ||||||||||||||||| ||||    
T  27974362 gaaataaatgaacatcaaatgatctcaggtttggaaagaattgatttggatgttcttccta 27974422  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 128
Target Start/End: Original strand, 28147205 - 28147257
Alignment:
Q  76 ccttttatcaactttgttgtatttacatgactttgttatttttattttatgca 128  Q
    |||||||||| || | ||||| ||| |||||||||||||| ||||||||||||    
T  28147205 ccttttatcatctctattgtacttatatgactttgttattcttattttatgca 28147257  T

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Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 8693778 - 8693714
Alignment:
Q  178 gaaataaatgaacaacaaatgaacttagctttggaagttattgatttggatgttctgcctatgat 242  Q
    |||||||||||||| ||||||||||||||||||||  ||||||||||||||||||| ||||||||    
T  8693778 gaaataaatgaacagcaaatgaacttagctttggagtttattgatttggatgttcttcctatgat 8693714  T

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Target: scaffold0257 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 242
Target Start/End: Original strand, 17164 - 17229
Alignment:
Q  178 gaaataaatgaacaacaaatgaacttagctttggaagttattgatttggatgtt-ctgcctatgat 242  Q
    |||||||||||||| |||||||||||||||||| ||   ||||||||||||||| |||||||||||    
T  17164 gaaataaatgaacagcaaatgaacttagctttgaaatacattgatttggatgttcctgcctatgat 17229  T

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Target: scaffold0257; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 125
Target Start/End: Original strand, 16969 - 17041
Alignment:
Q  53 tagtatattaaatatctccacaaccttttatcaactttgttgtatttacatgactttgttatttttattttat 125  Q
    |||||||| ||||||||||| | | |||||||| || | ||||| |||||  ||||||||||| |||||||||    
T  16969 tagtatataaaatatctccatagctttttatcatctctattgtaattacagcactttgttattcttattttat 17041  T

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