View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21580_low_52 (Length: 249)

Name: NF21580_low_52
Description: NF21580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21580_low_52
NF21580_low_52
[»] chr4 (8 HSPs)
chr4 (6-239)||(9672147-9672391)
chr4 (6-130)||(18489652-18489775)
chr4 (5-131)||(12868461-12868587)
chr4 (5-130)||(21512049-21512174)
chr4 (16-89)||(24699388-24699461)
chr4 (36-99)||(45073262-45073325)
chr4 (6-101)||(43148894-43148989)
chr4 (6-85)||(56027770-56027850)
[»] chr2 (11 HSPs)
chr2 (6-126)||(5357552-5357672)
chr2 (31-95)||(12037353-12037417)
chr2 (54-130)||(29699506-29699582)
chr2 (19-129)||(25271791-25271901)
chr2 (7-101)||(29923870-29923964)
chr2 (36-113)||(27249756-27249833)
chr2 (6-71)||(38342318-38342383)
chr2 (7-51)||(4964122-4964166)
chr2 (6-62)||(29927748-29927804)
chr2 (7-134)||(11915365-11915492)
chr2 (5-65)||(6069180-6069240)
[»] chr7 (4 HSPs)
chr7 (6-129)||(2729786-2729909)
chr7 (7-128)||(7682713-7682834)
chr7 (6-63)||(21836051-21836108)
chr7 (6-49)||(24604694-24604737)
[»] chr3 (9 HSPs)
chr3 (7-113)||(54524974-54525080)
chr3 (7-100)||(39028156-39028249)
chr3 (6-71)||(1699999-1700064)
chr3 (6-71)||(8029224-8029289)
chr3 (5-109)||(27844620-27844724)
chr3 (5-113)||(51380990-51381094)
chr3 (6-76)||(48723382-48723452)
chr3 (6-65)||(2395840-2395900)
chr3 (22-62)||(40362024-40362064)
[»] chr8 (5 HSPs)
chr8 (6-129)||(5920767-5920890)
chr8 (9-100)||(31645145-31645236)
chr8 (6-113)||(42456843-42456950)
chr8 (5-134)||(41581079-41581206)
chr8 (5-64)||(9780399-9780458)
[»] chr6 (8 HSPs)
chr6 (7-112)||(27176996-27177101)
chr6 (5-129)||(2285561-2285685)
chr6 (40-131)||(33900097-33900188)
chr6 (6-113)||(10498118-10498225)
chr6 (40-101)||(21611084-21611145)
chr6 (70-128)||(33629458-33629516)
chr6 (72-129)||(3445347-3445404)
chr6 (5-49)||(33929934-33929978)
[»] chr1 (7 HSPs)
chr1 (5-120)||(68901-69014)
chr1 (8-85)||(22023171-22023249)
chr1 (71-128)||(25992971-25993028)
chr1 (23-100)||(25993042-25993119)
chr1 (36-129)||(36979734-36979827)
chr1 (5-64)||(33150375-33150434)
chr1 (54-130)||(28108168-28108245)
[»] chr5 (2 HSPs)
chr5 (7-91)||(10315747-10315831)
chr5 (7-54)||(36563306-36563353)


Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 6 - 239
Target Start/End: Original strand, 9672147 - 9672391
Alignment:
Q  6 caatataatctcatcggcagttaactgtcaatggattttaaccgacgacagttaactgccaatggacattttcgtctttttctgatgtgtttcagcattg 105  Q
    ||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||    
T  9672147 caatataacttcatcggcagttaacagtcaatggattttaaccgacgacagttaactaccgatgggcattttcgtctttttctgatgtgtttcagcattg 9672246  T
Q  106 ttagaagtctgaacatcaattttctatttgaaatttgttatttaagactcccattttggtcataggccctgtcagaggtgatcacctcgtggcggatcat 205  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9672247 ttagaactgtgaacatcaattttctatttgaaatttgttatttaagactcccattttggtcataggccctgtcagaggtgatcacctcgtggcggatcat 9672346  T
Q  206 gg-----------atcatacctcatgcaccatctcaggaagtatt 239  Q
    ||           ||||||| ||||||||||||||||||||||||    
T  9672347 ggtgtagtacataatcatacatcatgcaccatctcaggaagtatt 9672391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 130
Target Start/End: Original strand, 18489652 - 18489775
Alignment:
Q  6 caatataatctcatcggcagttaactgtcaatggattttaaccgacgacagttaactgccaatggacattttcgtctttttctgatgtgtttcagcattg 105  Q
    ||||||||| |||||||||||||||||   ||||||||||||||||| ||||||||||   || |||||||  ||||||||||| ||| ||||| | |||    
T  18489652 caatataatttcatcggcagttaactgctgatggattttaaccgacggcagttaactg-tgatagacatttatgtctttttctggtgtatttcaaccttg 18489750  T
Q  106 ttagaagtctgaacatcaattttct 130  Q
    |||||||| | ||||||||||||||    
T  18489751 ttagaagtgttaacatcaattttct 18489775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 131
Target Start/End: Original strand, 12868461 - 12868587
Alignment:
Q  5 tcaatataatctcatcggcagttaactgtcaatggattttaaccgacgacagttaactgccaatggacattttcgtctttttctgatgtgtttcagcatt 104  Q
    ||||||||||||||||  |||||||||  | ||| |||| ||||||||||||||||||| | ||  |||| | ||| |||| ||| ||||||| ||| ||    
T  12868461 tcaatataatctcatcatcagttaactaccgatgaatttaaaccgacgacagttaactgtcgataaacatgtacgtgttttactggtgtgttttagcttt 12868560  T
Q  105 gttagaagtctgaacatcaattttcta 131  Q
    ||||||||| |||||| ||||||||||    
T  12868561 gttagaagtatgaacaacaattttcta 12868587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 130
Target Start/End: Original strand, 21512049 - 21512174
Alignment:
Q  5 tcaatataatctcatcggcagttaactgtcaatggattttaaccgacgacagttaactgccaatggacattttcgtctttttctgatgtgtttcagcatt 104  Q
    |||||||||  | ||||||||||||||||  ||  |||||||||| |  |||||||||||  |||||||||| |||||||||||| ||||||||| | ||    
T  21512049 tcaatataactttatcggcagttaactgttgatcaattttaaccggctgcagttaactgctgatggacatttacgtctttttctggtgtgtttcatcctt 21512148  T
Q  105 gttagaagtctgaacatcaattttct 130  Q
    |||  |||| | |||| |||||||||    
T  21512149 gtttaaagtgtcaacaacaattttct 21512174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 24699461 - 24699388
Alignment:
Q  16 tcatcggcagttaactgtcaatggattttaaccgacgacagttaactgccaatggacattttcgtctttttctg 89  Q
    ||||||| ||||||||| | |||||||||||| | || |||||||||| | |||||||||| ||||||||||||    
T  24699461 tcatcggtagttaactgccgatggattttaactggcggcagttaactggcgatggacatttacgtctttttctg 24699388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 99
Target Start/End: Original strand, 45073262 - 45073325
Alignment:
Q  36 atggattttaaccgacgacagttaactgccaatggacattttcgtctttttctgatgtgtttca 99  Q
    |||||||||||||| || |||||||||||| |||||||||| | |||||||||  |||||||||    
T  45073262 atggattttaaccggcggcagttaactgccgatggacatttacatctttttctagtgtgtttca 45073325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 101
Target Start/End: Original strand, 43148894 - 43148989
Alignment:
Q  6 caatataatctcatcggcagttaactgtcaatggattttaaccgacgacagttaactgccaatggacattttcgtctttttctgatgtgtttcagc 101  Q
    |||||||| ||||||||||||||| |||| |||||||| |||||||  ||||||| | |  |  | ||||| ||| |||||||| |||||||||||    
T  43148894 caatataacctcatcggcagttaattgtcgatggatttcaaccgacagcagttaaatactgaatgtcatttacgtttttttctggtgtgtttcagc 43148989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 85
Target Start/End: Original strand, 56027770 - 56027850
Alignment:
Q  6 caatataatctcatcggcagttaactgtcaatgga-ttttaaccgacgacagttaactgccaatggacattttcgtctttt 85  Q
    |||||||||  |||||||||||||||||| ||| | |||||||||  |||||||||||| | |  |||||||| |||||||    
T  56027770 caatataattccatcggcagttaactgtcgatgaatttttaaccggtgacagttaactgtcgacagacatttttgtctttt 56027850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 6 - 126
Target Start/End: Complemental strand, 5357672 - 5357552
Alignment:
Q  6 caatataatctcatcggcagttaactgtcaatggattttaaccgacgacagttaactgccaatggacattttcgtctttttctgatgtgtttcagcattg 105  Q
    |||||||| |||||||||||||||||||| ||||| |||||||| | ||||||||||| | |||||||||| |||||||||||  ||||||||||| |||    
T  5357672 caatataacctcatcggcagttaactgtcgatggaatttaaccggcaacagttaactgtcgatggacatttacgtctttttctagtgtgtttcagccttg 5357573  T
Q  106 ttagaagtctgaacatcaatt 126  Q
    |||||||| |||||| |||||    
T  5357572 ttagaagtgtgaacaccaatt 5357552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 12037353 - 12037417
Alignment:
Q  31 tgtcaatggattttaaccgacgacagttaactgccaatggacattttcgtctttttctgatgtgt 95  Q
    ||||||||||||||||||||||  ||||||||||||||| |||||| |||||||||||| |||||    
T  12037353 tgtcaatggattttaaccgacggtagttaactgccaatgaacatttacgtctttttctggtgtgt 12037417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 29699582 - 29699506
Alignment:
Q  54 cagttaactgccaatggacattttcgtctttttctgatgtgtttcagcattgttagaagtctgaacatcaattttct 130  Q
    |||||||||||| |||||||||| |||||||||||| ||||||||||| ||||||||| | |||| | |||||||||    
T  29699582 cagttaactgccgatggacatttacgtctttttctggtgtgtttcagccttgttagaaatatgaataccaattttct 29699506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 25271791 - 25271901
Alignment:
Q  19 tcggcagttaactgtcaatggattttaaccgacgacagttaactgccaatggacattttcgtctttttctgatgtgtttcagcattgttagaagtctgaa 118  Q
    |||| ||||||||| | ||| ||||||| |  || |||||||| ||| || ||| ||| |||||||||||||||||||||||| ||||| ||||| | ||    
T  25271791 tcggtagttaactgccgatgaattttaaacagcggcagttaaccgccgatagacctttacgtctttttctgatgtgtttcagccttgtttgaagtgtaaa 25271890  T
Q  119 catcaattttc 129  Q
    || ||||||||    
T  25271891 caacaattttc 25271901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 101
Target Start/End: Complemental strand, 29923964 - 29923870
Alignment:
Q  7 aatataatctcatcggcagttaactgtcaatggattttaaccgacgacagttaactgccaatggacattttcgtctttttctgatgtgtttcagc 101  Q
    ||||||| ||||||||||||||| ||   |||||||||||||| || |||||||||| | ||  ||||||  ||||||||||| |||||||||||    
T  29923964 aatataacctcatcggcagttaattgctgatggattttaaccggcggcagttaactgtcgataaacatttatgtctttttctgttgtgtttcagc 29923870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 113
Target Start/End: Complemental strand, 27249833 - 27249756
Alignment:
Q  36 atggattttaaccgacgacagttaactgccaatggacattttcgtctttttctgatgtgtttcagcattgttagaagt 113  Q
    |||||||||||| | || |||||||||||| |||||||||| | |||||||| | ||||||||||| ||||| |||||    
T  27249833 atggattttaacaggcggcagttaactgccgatggacatttacatctttttccggtgtgtttcagccttgtttgaagt 27249756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 71
Target Start/End: Complemental strand, 38342383 - 38342318
Alignment:
Q  6 caatataatctcatcggcagttaactgtcaatggattttaaccgacgacagttaactgccaatgga 71  Q
    |||||||| |||||||||||||||||||| ||| ||||||||| |||| ||||||| ||| |||||    
T  38342383 caatataacctcatcggcagttaactgtctatgaattttaaccaacgatagttaaccgccgatgga 38342318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 4964166 - 4964122
Alignment:
Q  7 aatataatctcatcggcagttaactgtcaatggattttaaccgac 51  Q
    ||||||||||||||||||||||||||  |||||||||||||||||    
T  4964166 aatataatctcatcggcagttaactgctaatggattttaaccgac 4964122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 29927748 - 29927804
Alignment:
Q  6 caatataatctcatcggcagttaactgtcaatggattttaaccgacgacagttaact 62  Q
    |||||||| ||||||||||||||||||   |||||||||||||||||| ||||||||    
T  29927748 caatataacctcatcggcagttaactgctgatggattttaaccgacgatagttaact 29927804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 134
Target Start/End: Complemental strand, 11915492 - 11915365
Alignment:
Q  7 aatataatctcatcggcagttaactgtcaatggattttaaccgacgacagttaactgccaatggacattttcgtctttttctgatgtgtttcagcattgt 106  Q
    |||||||||| || |||||||||  ||  |||||||||||||| |   ||||||||| | ||| |||||| | | |||||||| ||||||||||  ||||    
T  11915492 aatataatcttattggcagttaatcgttgatggattttaaccggcagtagttaactgtcgatgaacatttacatttttttctggtgtgtttcagtcttgt 11915393  T
Q  107 tagaagtctgaacatcaattttctattt 134  Q
    ||||||| || ||| ||||||| |||||    
T  11915392 tagaagtgtgtacaccaattttttattt 11915365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 6069240 - 6069180
Alignment:
Q  5 tcaatataatctcatcggcagttaactgtcaatggattttaaccgacgacagttaactgcc 65  Q
    ||||||||||||||||| |||||||||| | ||| |||||||||||||  | |||||||||    
T  6069240 tcaatataatctcatcgacagttaactgccgatgaattttaaccgacggtaattaactgcc 6069180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 6 - 129
Target Start/End: Complemental strand, 2729909 - 2729786
Alignment:
Q  6 caatataatctcatcggcagttaactgtcaatggattttaaccgacgacagttaactgccaatggacattttcgtctttttctgatgtgtttcagcattg 105  Q
    |||||||| ||||||| | ||||||| || |||||||||||| |  | |||||||||||| |||||||||| |||||||||||| ||||||||||| |||    
T  2729909 caatataacctcatcgactgttaactatcgatggattttaactggtggcagttaactgccgatggacatttacgtctttttctgttgtgtttcagccttg 2729810  T
Q  106 ttagaagtctgaacatcaattttc 129  Q
    |||||||| |||| ||||||||||    
T  2729809 ttagaagtgtgaatatcaattttc 2729786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 128
Target Start/End: Original strand, 7682713 - 7682834
Alignment:
Q  7 aatataatctcatcggcagttaactgtcaatggattttaaccgacgacagttaactgccaatggacattttcgtctttttctgatgtgtttcagcattgt 106  Q
    |||||||  |||| |||||||||||||  |||||||||||| | |  ||||||||| |||||| | ||||   ||||||| |||||||||||||| || |    
T  7682713 aatataacttcattggcagttaactgttgatggattttaactggcagcagttaactaccaatgaatatttaaatctttttttgatgtgtttcagccttat 7682812  T
Q  107 tagaagtctgaacatcaatttt 128  Q
    ||||||| | |||| |||||||    
T  7682813 tagaagtgtaaacagcaatttt 7682834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 21836108 - 21836051
Alignment:
Q  6 caatataatctcatcggcagttaactgtcaatggattttaaccgacgacagttaactg 63  Q
    |||||||| || ||||||||||||||||  |||| |||||||||||||||||||||||    
T  21836108 caatataaccttatcggcagttaactgttgatggtttttaaccgacgacagttaactg 21836051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 24604737 - 24604694
Alignment:
Q  6 caatataatctcatcggcagttaactgtcaatggattttaaccg 49  Q
    |||||||| ||||||| ||||||||||||||||| |||||||||    
T  24604737 caatataacctcatcgacagttaactgtcaatggtttttaaccg 24604694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 113
Target Start/End: Original strand, 54524974 - 54525080
Alignment:
Q  7 aatataatctcatcggcagttaactgtcaatggattttaaccgacgacagttaactgccaatggacattttcgtctttttctgatgtgtttcagcattgt 106  Q
    ||||||| |||||||||||||||||||  ||||| |||||||| || ||||||||||||||| ||||||| ||  |||||||| ||||||||||| || |    
T  54524974 aatataacctcatcggcagttaactgttgatggaatttaaccggcggcagttaactgccaatagacatttacgattttttctggtgtgtttcagccttct 54525073  T
Q  107 tagaagt 113  Q
    |||||||    
T  54525074 tagaagt 54525080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 100
Target Start/End: Original strand, 39028156 - 39028249
Alignment:
Q  7 aatataatctcatcggcagttaactgtcaatggattttaaccgacgacagttaactgccaatggacattttcgtctttttctgatgtgtttcag 100  Q
    ||||||| || ||||||| ||||||||| ||| |||||||||| || |||||||||||| ||| |||||| |||||||||||| ||||||||||    
T  39028156 aatataaccttatcggcaattaactgtcgatgaattttaaccggcggcagttaactgccgatgaacatttacgtctttttctggtgtgtttcag 39028249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 71
Target Start/End: Complemental strand, 1700064 - 1699999
Alignment:
Q  6 caatataatctcatcggcagttaactgtcaatggattttaaccgacgacagttaactgccaatgga 71  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||  ||||||| ||| |||||    
T  1700064 caatataatctcaccggcagttaactgtcaatggattttaactgacggtagttaacggccgatgga 1699999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 71
Target Start/End: Complemental strand, 8029289 - 8029224
Alignment:
Q  6 caatataatctcatcggcagttaactgtcaatggattttaaccgacgacagttaactgccaatgga 71  Q
    |||||||| |||||||||| ||||||| | |||  ||||||||||||||||||||||||| |||||    
T  8029289 caatataacctcatcggcaattaactgccgatgagttttaaccgacgacagttaactgccgatgga 8029224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 109
Target Start/End: Complemental strand, 27844724 - 27844620
Alignment:
Q  5 tcaatataatctcatcggcagttaactgtcaatggattttaaccgacgacagttaactgccaatggacattttcgtctttttctgatgtgtttcagcatt 104  Q
    |||||||||| ||||||||||||||||  | ||| ||||||||||||| ||||||||||   ||||| |||| ||| |||||||  ||| ||||| | ||    
T  27844724 tcaatataatttcatcggcagttaactaccgatgaattttaaccgacggcagttaactgtagatggatatttacgtatttttcttgtgtatttcaacctt 27844625  T
Q  105 gttag 109  Q
    |||||    
T  27844624 gttag 27844620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 113
Target Start/End: Original strand, 51380990 - 51381094
Alignment:
Q  5 tcaatataatctcatcggcagttaactgtcaatggattttaaccgacgacagttaactgccaatggacattttcgtctttttctgatgtgtttcagcatt 104  Q
    |||||||||  ||||||| ||||||| ||| |||||||||||| | || |||||||||    |||| | ||| |||||||||||| ||||||||||| ||    
T  51380990 tcaatataacatcatcggtagttaacagtcgatggattttaactggcggcagttaact----atgggcgtttacgtctttttctggtgtgtttcagcctt 51381085  T
Q  105 gttagaagt 113  Q
    ||| |||||    
T  51381086 gtttgaagt 51381094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 48723382 - 48723452
Alignment:
Q  6 caatataatctcatcggcagttaactgtcaatggattttaaccgacgacagttaactgccaatggacattt 76  Q
    |||||||||||||||||||| ||||||   ||  ||||||| ||||||||||||||||   ||||||||||    
T  48723382 caatataatctcatcggcagataactgctgatacattttaatcgacgacagttaactgttgatggacattt 48723452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 65
Target Start/End: Complemental strand, 2395900 - 2395840
Alignment:
Q  6 caatataatctcatcggcagttaactgtcaatggatttt-aaccgacgacagttaactgcc 65  Q
    |||||||  |||||||| ||||||||| | ||||||||| ||||| |||||||||||||||    
T  2395900 caatatagcctcatcggtagttaactgccgatggatttttaaccggcgacagttaactgcc 2395840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 40362024 - 40362064
Alignment:
Q  22 gcagttaactgtcaatggattttaaccgacgacagttaact 62  Q
    ||||||||||||| |||||||||||||||||  ||||||||    
T  40362024 gcagttaactgtcgatggattttaaccgacggtagttaact 40362064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 6 - 129
Target Start/End: Complemental strand, 5920890 - 5920767
Alignment:
Q  6 caatataatctcatcggcagttaactgtcaatggattttaaccgacgacagttaactgccaatggacattttcgtctttttctgatgtgtttcagcattg 105  Q
    ||||||||||||||||||||||||||  | ||  |||||||| | | ||| ||||| |||||| ||||||| ||| |||||||| ||||||| ||| |||    
T  5920890 caatataatctcatcggcagttaacttccgatatattttaactggcaacaattaacggccaatagacatttacgtatttttctgctgtgttttagccttg 5920791  T
Q  106 ttagaagtctgaacatcaattttc 129  Q
    |||||||| |||||| ||||||||    
T  5920790 ttagaagtgtgaacaacaattttc 5920767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 100
Target Start/End: Original strand, 31645145 - 31645236
Alignment:
Q  9 tataatctcatcggcagttaactgtcaatggattttaaccgacgacagttaactgccaatggacattttcgtctttttctgatgtgtttcag 100  Q
    ||||| |||||||||| ||||||| | ||||||||||||||||| |||||||||||| |||| ||||| | || ||||||| ||||||||||    
T  31645145 tataacctcatcggcacttaactgccgatggattttaaccgacggcagttaactgccgatggtcatttacttcattttctggtgtgtttcag 31645236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 113
Target Start/End: Complemental strand, 42456950 - 42456843
Alignment:
Q  6 caatataatctcatcggcagttaactgtcaatggattttaaccgacgacagttaactgccaatggacattttcgtctttttctgatgtgtttcagcattg 105  Q
    |||||||| |||||||| | ||| ||||  |||||||||||||||||  |||||| || | ||||||| || |||||||||||||||| ||||||| |||    
T  42456950 caatataacctcatcggtaattagctgttgatggattttaaccgacggtagttaattgtcgatggacaattacgtctttttctgatgtatttcagccttg 42456851  T
Q  106 ttagaagt 113  Q
    ||||||||    
T  42456850 ttagaagt 42456843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 134
Target Start/End: Original strand, 41581079 - 41581206
Alignment:
Q  5 tcaatataatctcatcggcagttaactgtcaatggattttaaccgacgacagttaactgccaatggacattttcgtctttttctgatgtgtttcagcatt 104  Q
    |||||||||  |||||  |||||||||  | ||| ||||||| | |||||| ||||||| | |||||||||| |||||||||||  ||||||||||| ||    
T  41581079 tcaatataacttcatcaacagttaactaccgatgaattttaatctacgacacttaactgtcgatggacatttacgtctttttctagtgtgtttcagcctt 41581178  T
Q  105 gttagaagtctgaacatcaattttctattt 134  Q
    ||| ||||  || ||| |||||||||||||    
T  41581179 gtttgaag--tgtacaccaattttctattt 41581206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 9780399 - 9780458
Alignment:
Q  5 tcaatataatctcatcggcagttaactgtcaatggattttaaccgacgacagttaactgc 64  Q
    |||||||||  ||||||  ||||||||| | ||| |||||||||||||||||||||||||    
T  9780399 tcaatataacatcatcgatagttaactgccgatgaattttaaccgacgacagttaactgc 9780458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 112
Target Start/End: Original strand, 27176996 - 27177101
Alignment:
Q  7 aatataatctcatcggcagttaactgtcaatggattttaaccgacgacagttaactgccaatggacattttcgtctttttctgatgtgtttcagcattgt 106  Q
    ||||||| ||||||||||||||||| || ||| ||||||| || || |||||||||| | ||| |||||| ||||||||||| ||||||||||   ||||    
T  27176996 aatataacctcatcggcagttaactatcgatgaattttaatcggcggcagttaactgtcgatgaacatttacgtctttttctaatgtgtttcaatcttgt 27177095  T
Q  107 tagaag 112  Q
    ||||||    
T  27177096 tagaag 27177101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 5 - 129
Target Start/End: Complemental strand, 2285685 - 2285561
Alignment:
Q  5 tcaatataatctcatcggcagttaactgtcaatggattttaaccgacgacagttaactgccaatggacattttcgtctttttctgatgtgtttcagcatt 104  Q
    |||||||||  |||||| ||||| | | || ||| ||||||||||||   ||||||||||  |||||||||| ||||||||||| |||||||||| | ||    
T  2285685 tcaatataacttcatcgacagttgattatcgatgaattttaaccgacagtagttaactgctgatggacatttacgtctttttctaatgtgtttcaacctt 2285586  T
Q  105 gttagaagtctgaacatcaattttc 129  Q
    ||| ||||| |||||| ||||||||    
T  2285585 gtttgaagtgtgaacagcaattttc 2285561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 40 - 131
Target Start/End: Complemental strand, 33900188 - 33900097
Alignment:
Q  40 attttaaccgacgacagttaactgccaatggacattttcgtctttttctgatgtgtttcagcattgttagaagtctgaacatcaattttcta 131  Q
    |||||||||| || ||||||||| ||||||  ||||| |||||||||||| |||||||| |||||||| ||||| | |||| ||||||||||    
T  33900188 attttaaccggcggcagttaactaccaatgagcatttacgtctttttctggtgtgtttcggcattgtttgaagtgtaaacaacaattttcta 33900097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 113
Target Start/End: Complemental strand, 10498225 - 10498118
Alignment:
Q  6 caatataatctcatcggcagttaactgtcaatggattttaaccgacgacagttaactgccaatggacattttcgtctttttctgatgtgtttcagcattg 105  Q
    |||||||| |||||   |||||||||||| ||| ||||||| ||  | |||||||||| | ||| |||||| |||||||||||||||||||||| | ||     
T  10498225 caatataacctcatttacagttaactgtcgatgaattttaaacggtggcagttaactgtcgatgaacatttacgtctttttctgatgtgtttcaacttta 10498126  T
Q  106 ttagaagt 113  Q
    ||||||||    
T  10498125 ttagaagt 10498118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 21611084 - 21611145
Alignment:
Q  40 attttaaccgacgacagttaactgccaatggacattttcgtctttttctgatgtgtttcagc 101  Q
    |||||||||||||||||||||||  | ||| |||||| ||||||||||| ||||||||||||    
T  21611084 attttaaccgacgacagttaactatcgatgaacatttacgtctttttctaatgtgtttcagc 21611145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 33629458 - 33629516
Alignment:
Q  70 gacattttcgtctttttctgatgtgtttcagcattgttagaagtctgaacatcaatttt 128  Q
    ||||||| |||||||||||||||||||||||| |||||| ||||  ||||| |||||||    
T  33629458 gacatttacgtctttttctgatgtgtttcagccttgttaaaagtgcgaacaacaatttt 33629516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 129
Target Start/End: Complemental strand, 3445404 - 3445347
Alignment:
Q  72 cattttcgtctttttctgatgtgtttcagcattgttagaagtctgaacatcaattttc 129  Q
    ||||| ||||||||||| |||||||||||| ||||| || || |||||| ||||||||    
T  3445404 catttacgtctttttctaatgtgtttcagccttgtttgaggtatgaacaacaattttc 3445347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 33929978 - 33929934
Alignment:
Q  5 tcaatataatctcatcggcagttaactgtcaatggattttaaccg 49  Q
    |||||||| ||||||||| ||||||||| | ||||||||||||||    
T  33929978 tcaatatactctcatcggtagttaactgccgatggattttaaccg 33929934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 120
Target Start/End: Complemental strand, 69014 - 68901
Alignment:
Q  5 tcaatataatctcatcggcagttaactgtcaatggattttaaccgacgacagttaactgccaatggacattttcgtctttttctgatgtgtttcagcatt 104  Q
    |||||||||  ||||||| |||||| ||| | || |||||||||||||||||||||||| | || ||||||| |||| ||||||  ||||||||||  ||    
T  69014 tcaatataacatcatcggtagttaagtgtga-tgaattttaaccgacgacagttaactgtcgatagacatttacgtc-ttttctagtgtgtttcagtttt 68917  T
Q  105 gttagaagtctgaaca 120  Q
    ||||||||| ||||||    
T  68916 gttagaagtgtgaaca 68901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 22023171 - 22023249
Alignment:
Q  8 atataatctcatcggcagttaactgtcaatgga-ttttaaccgacgacagttaactgccaatggacattttcgtctttt 85  Q
    |||||| |||||||||||||||||| | ||||| ||||||||||||||||||||||| | | ||||| || ||||||||    
T  22023171 atataacctcatcggcagttaactgccgatggatttttaaccgacgacagttaactgtcgacggacaattacgtctttt 22023249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 128
Target Start/End: Complemental strand, 25993028 - 25992971
Alignment:
Q  71 acattttcgtctttttctgatgtgtttcagcattgttagaagtctgaacatcaatttt 128  Q
    |||||| |||||||||||||||| ||||||  ||||| ||||| ||||||||||||||    
T  25993028 acatttacgtctttttctgatgtatttcagacttgtttgaagtgtgaacatcaatttt 25992971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 25993119 - 25993042
Alignment:
Q  23 cagttaactgtcaatggattttaaccgacgacagttaactgccaatggacattttcgtctttttctgatgtgtttcag 100  Q
    |||||||||||| ||| ||||||| |||  ||||||||||||  | | |||||| |||||||||||||||| ||||||    
T  25993119 cagttaactgtcgatgtattttaatcgaaaacagttaactgctgaagaacatttacgtctttttctgatgtatttcag 25993042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 129
Target Start/End: Complemental strand, 36979827 - 36979734
Alignment:
Q  36 atggattttaaccgacgacagttaactgccaatggacattttcgtctttttctgatgtgtttcagcattgttagaagtctgaacatcaattttc 129  Q
    ||||||||||| || || || |||| |||| ||  |||||| |||||||||||| ||||||||||| ||||||||||  |||| | ||||||||    
T  36979827 atggattttaatcggcggcaattaattgccgattaacatttacgtctttttctggtgtgtttcagctttgttagaagcgtgaaaaacaattttc 36979734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 33150434 - 33150375
Alignment:
Q  5 tcaatataatctcatcggcagttaactgtcaatggattttaaccgacgacagttaactgc 64  Q
    ||||||||| |||||| ||||||||||| ||||  ||||||||||| || ||||||||||    
T  33150434 tcaatataacctcatcagcagttaactgccaatatattttaaccgatgatagttaactgc 33150375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 130
Target Start/End: Original strand, 28108168 - 28108245
Alignment:
Q  54 cagttaactgccaatggacattttcgtcttttt-ctgatgtgtttcagcattgttagaagtctgaacatcaattttct 130  Q
    |||||| || || ||| |||||| ||||||||| ||| | ||||||||| ||||||||||| |||||| |||||||||    
T  28108168 cagttagctaccgatgaacatttacgtcttttttctggtttgtttcagccttgttagaagtgtgaacaacaattttct 28108245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 10315747 - 10315831
Alignment:
Q  7 aatataatctcatcggcagttaactgtcaatggattttaaccgacgacagttaactgccaatggacattttcgtctttttctgat 91  Q
    ||||||| |||||||||||||||||| | ||  ||||||||   || || ||||||||| |||| ||||| ||||||||||||||    
T  10315747 aatataacctcatcggcagttaactgccgataaattttaacacgcggcaattaactgccgatgggcatttacgtctttttctgat 10315831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 54
Target Start/End: Complemental strand, 36563353 - 36563306
Alignment:
Q  7 aatataatctcatcggcagttaactgtcaatggattttaaccgacgac 54  Q
    ||||||| |||||||||||||||||||| |||  ||||||||||||||    
T  36563353 aatataacctcatcggcagttaactgtcgatgagttttaaccgacgac 36563306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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