View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21580_low_53 (Length: 242)
Name: NF21580_low_53
Description: NF21580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21580_low_53 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 20 - 222
Target Start/End: Original strand, 34259535 - 34259737
Alignment:
| Q |
20 |
tgaaagtgaaatgtatatttatcagaagaagaagcaatgacaattagtacaccactgttggtgagattccctttgttgatggatgatactgacactacca |
119 |
Q |
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| T |
34259535 |
tgaaagtgaaatgtatatttatcagaagaagaagcaatgacaattagtacaccacagttggtgagattccctttgttgatggatgatagtgacactacca |
34259634 |
T |
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| Q |
120 |
attattcagcatgcaccattccttggaggctcccttctgatgatccaaaagtccccactcccactgagttatcttggattaatctcttttgcagtggtat |
219 |
Q |
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| T |
34259635 |
attattcagcatgcaccattccttggaggctcccttctgatgatccaaaagtccccactcccactgagttatcttggattaatctcttttgcagtggtat |
34259734 |
T |
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| Q |
220 |
ccc |
222 |
Q |
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||| |
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| T |
34259735 |
ccc |
34259737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 39 - 222
Target Start/End: Original strand, 34249488 - 34249671
Alignment:
| Q |
39 |
tatcagaagaagaagcaatgacaattagtacaccactgttggtgagattccctttgttgatggatgatactgacactaccaattattcagcatgcaccat |
138 |
Q |
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|||||||||||||||||||| ||| ||||| | ||| |||||||||||||||||| ||||||||||||||||| |||||||| || || ||||||||||| |
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| T |
34249488 |
tatcagaagaagaagcaatggcaagtagtagatcacagttggtgagattccctttattgatggatgatactgatactaccaaatactccgcatgcaccat |
34249587 |
T |
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| Q |
139 |
tccttggaggctcccttctgatgatccaaaagtccccactcccactgagttatcttggattaatctcttttgcagtggtatccc |
222 |
Q |
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| T |
34249588 |
tccttggaggttcgcttctgatgatccatgtgtcgtcactcccactgagttatcttggattaatctcctacacagtggtatccc |
34249671 |
T |
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