View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21580_low_57 (Length: 235)
Name: NF21580_low_57
Description: NF21580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21580_low_57 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 9671947 - 9671727
Alignment:
| Q |
1 |
aagtttgaatgtcttagacttttcatattggttgttgcagtttaggttacccgtgtttctttgaggcctcctcaaatttattggaagatattttcgatga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9671947 |
aagtttgaatgtcttagacttttcatattggttgttgcagtttaggttactcgtgtttttttgaggcctcctcaaatttattggaagatatttttgatga |
9671848 |
T |
|
| Q |
101 |
tgggtattacaatttaagtcactcttgtttctttgaggcctcctttaatttatcggaggatatcttccaaagatgtatcgtacttgtcttgagcaactta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
9671847 |
tgggtattacaatttaagtcactcttgtttctttgaggcctccttaaatttatcggaggatatcttctaaagatgtatcgtacttgtcttgagcaactta |
9671748 |
T |
|
| Q |
201 |
gggtgttttgatcctacataa |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
9671747 |
gggtgttttgatcctacataa |
9671727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University