View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21580_low_6 (Length: 705)
Name: NF21580_low_6
Description: NF21580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21580_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 456; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 4 - 594
Target Start/End: Original strand, 38820516 - 38821078
Alignment:
| Q |
4 |
aagaatatcatctagtttgtgcatgtagattactaggacgctctcctagtactcagtttcatccatcaattattgagtgagcgagagaaatcaatgtttg |
103 |
Q |
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| T |
38820516 |
aagaatatcatctagtttgtgcatgtagatt--------gctctcctagtactcagtttcatccatcaattattgagtgagcgagagaaatcaatgtttg |
38820607 |
T |
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| Q |
104 |
tttccataatttatgagaaaaacttgtagctcttggcttgaacgatgatattcctcatagcaccaattggggatagtgtcattatcatgacaccaataac |
203 |
Q |
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| T |
38820608 |
tttccataatttatgagaagaacttgtagctcttggcttgaacgatgatattcctcatagcaccaattggggatagtgtcattatcatgacaccaataac |
38820707 |
T |
|
| Q |
204 |
aatgcatatctgaaatagaatagaaaatgaaaaaagaacaaaatcaattagtctcattaatgtgctaattgagtttggtaaatgctcgtaattaacctac |
303 |
Q |
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| T |
38820708 |
aatgcatatctgaaatagaatagaaaatgaaaaaagaacaaaatcaattagtctcattaatgtgctaattgagtttggtaaatgctcgtaattaacctac |
38820807 |
T |
|
| Q |
304 |
ccaattaattgtccaagacgagccaaatttcttgggtttcttgagtttaagccagatgatacagggcagctgcaagtataatagtatataaattaagaca |
403 |
Q |
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| T |
38820808 |
ccaattaattgtccaagacaagccaaatttcttgggtttcttgagtttaagccagatgatacagggcagctgcaagaataatagtatataaattaagaca |
38820907 |
T |
|
| Q |
404 |
aattaggctcgtatactttggttgtgtaatgtaatgtatttgatcattaatctttcatttaaaacgttatctaaaaattgaataagatagtatgnnnnnn |
503 |
Q |
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| T |
38820908 |
aattaggctcgtatactttggttgtgtaatgtaatgtatttgatcattaatctttc--------------------attgaataagatagtatgaaaaaa |
38820987 |
T |
|
| Q |
504 |
ntggtttgcttacgaagtaacttgttggggctaaggcaaacccaccgaggaatccaagaagagaaccaaagaatgggatactaatggcaat |
594 |
Q |
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| T |
38820988 |
atggtttgcttacgaagtaacttgttggggctaaggcaaaccctccgaggaatccaagaagagaaccaaagaatgggacactaatggcaat |
38821078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 590 - 687
Target Start/End: Original strand, 38826122 - 38826219
Alignment:
| Q |
590 |
gcaatgagcatggtcaacgctacaaaataagatcaaaaagttaacaaaaaactaacggatgaagctttcattgatctagtgcaacaagtagacatacc |
687 |
Q |
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| T |
38826122 |
gcaatgaacatggtcaacgctacaaaataagatcaaaaagttaacaaaaaactaacggatgaagctttcattgatctagtgcaacaagtagacatacc |
38826219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 301 - 366
Target Start/End: Complemental strand, 34410645 - 34410580
Alignment:
| Q |
301 |
tacccaattaattgtccaagacgagccaaatttcttgggtttcttgagtttaagccagatgataca |
366 |
Q |
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||||||||| ||| |||||||| |||||||| |||| ||||| | ||||||||||| |||||||| |
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| T |
34410645 |
tacccaatttattatccaagacaagccaaatctcttaggtttgtaaagtttaagccatatgataca |
34410580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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