View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21580_low_61 (Length: 220)

Name: NF21580_low_61

Description: NF21580

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF21580_low_61

[»] chr4 (2 HSPs)

Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 2)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 165; E-Value: 2e-88

Query Start/End: Original strand, 1 - 220

Target Start/End: Original strand, 43179698 - 43179918

Alignment:

Q	1	aaattaggctcaccactctctgttt-ctctactttttcttttatccttgagccaatctatattgtgtgtttcttgtcttgtcttgtagatgatttacttg	99	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	43179698	aaattaggctcacgactctctattttctctactttttcttttgtcctttggccaatctatattgtgtgtttcttgtcttgtcttggagatgatttacttg	43179797	T

Q	100	tatctatctatttatttgtctatttttgttggtagatagcagaaatgataataatgattaagaattcaaacacaattgactaagatggggtttgaacccc	199	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|
T	43179798	tatctatctatttatttgtctatttttgttggtagatagccgaaatgataataataattaagaattcaaacacaattgactgagatggggtctgaacccc	43179897	T

Q	200	aatcacaacttctaattcatc	220	Q
		\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|
T	43179898	aatcacgacttctagttcatc	43179918	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2

Raw Score: 38; E-Value: 0.000000000001

Query Start/End: Original strand, 120 - 210

Target Start/End: Original strand, 43173551 - 43173643

Alignment:

Q	120	tatttttgttggtagatagcagaaatgataataatgattaagaattcaaacaca--attgactaagatggggtttgaaccccaatcacaactt	210	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\| \|\|\| \|\|\|\|\| \|\|\|\|\| \| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	43173551	tattttttttggtaggtagacgaaatgataataataattaggaactcacacacacaattgaatgagttggggtttgaaccccaatcacaactt	43173643	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]