View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21580_low_7 (Length: 655)

Name: NF21580_low_7
Description: NF21580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21580_low_7
NF21580_low_7
[»] chr3 (4 HSPs)
chr3 (309-454)||(50601194-50601339)
chr3 (518-637)||(50601403-50601523)
chr3 (181-308)||(38879563-38879690)
chr3 (19-90)||(38879380-38879451)
[»] chr4 (2 HSPs)
chr4 (19-99)||(25910716-25910796)
chr4 (181-308)||(25910491-25910618)
[»] chr2 (1 HSPs)
chr2 (24-92)||(26864102-26864171)
[»] chr7 (1 HSPs)
chr7 (313-352)||(27270266-27270305)
[»] scaffold0312 (1 HSPs)
scaffold0312 (313-353)||(7954-7994)
[»] chr8 (1 HSPs)
chr8 (313-353)||(20469301-20469341)
[»] chr1 (1 HSPs)
chr1 (313-353)||(422578-422618)


Alignment Details
Target: chr3 (Bit Score: 113; Significance: 7e-57; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 309 - 454
Target Start/End: Original strand, 50601194 - 50601339
Alignment:
Q  309 ataaataatatatgtaaggttcggagtttgaacctcagccaccacnnnnnnngatcaacatgtaaaataattttatactatggtacacattaatgaatca 408  Q
    |||||||||||||||||||| || |||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||| |||||    
T  50601194 ataaataatatatgtaaggtgcgaagtttgaacctcagccaccacaataaaagatcaacatgtaaaataattttatactatggtacacattaataaatca 50601293  T
Q  409 tatatttacttaaaatgtgtatggctatttattacaatttttgtgg 454  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  50601294 tatatttacttaaaatgtgtatggctatttattacaatttttgtgg 50601339  T

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Target: chr3; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 518 - 637
Target Start/End: Original strand, 50601403 - 50601523
Alignment:
Q  518 gacaaattgatattgttaagacttatggttaaaaaagcaaattttatatcataaac-annnnnnnnatactttttaaaggttgactatacaagttgttag 616  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |        ||||||||||||||||||||||||||||||||||    
T  50601403 gacaaattgatattgttaagacttatggttaaaaaagcaaattttatatcataaacgattttttttatactttttaaaggttgactatacaagttgttag 50601502  T
Q  617 gattttcctaaaagttaatat 637  Q
    ||||||| |||||||||||||    
T  50601503 gattttcttaaaagttaatat 50601523  T

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Target: chr3; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 181 - 308
Target Start/End: Original strand, 38879563 - 38879690
Alignment:
Q  181 aaggggatgtgaagatgaaaacacaatatagaaatggagagaaacatgtttgatggggtcaattaagtataagatacaccgttcgcgtgataaacacgaa 280  Q
    |||||||| ||||||||||||||||  ||| ||||||||||||| |||||||||  |||||| |||| |||||| | | | |||| ||||| | ||||||    
T  38879563 aaggggatatgaagatgaaaacacagcataaaaatggagagaaatatgtttgataaggtcaactaagcataagaaatagcattcgtgtgattagcacgaa 38879662  T
Q  281 aaagctctcgtgctatttagcatttttc 308  Q
    |||| | |||||||||||||||||||||    
T  38879663 aaagttatcgtgctatttagcatttttc 38879690  T

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Target: chr3; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 38879380 - 38879451
Alignment:
Q  19 atgaagcacaaaacagatgaggggtaggtaatggcaagggatcagtgcactgtagcttaaaaagaaaagaag 90  Q
    ||||||||||||| ||||||| |||||||| ||| |||||| ||| ||||||||||||||||||||||||||    
T  38879380 atgaagcacaaaatagatgagaggtaggtagtggtaagggagcagagcactgtagcttaaaaagaaaagaag 38879451  T

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Target: chr4 (Bit Score: 61; Significance: 7e-26; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 25910796 - 25910716
Alignment:
Q  19 atgaagcacaaaacagatgaggggtaggtaatggcaagggatcagtgcactgtagcttaaaaagaaaagaagcatgtagat 99  Q
    ||||||||||||||||||||| |||||||| |||||||||| ||| |||||||||||||||||||||||||||| ||||||    
T  25910796 atgaagcacaaaacagatgagaggtaggtagtggcaagggagcagagcactgtagcttaaaaagaaaagaagcaggtagat 25910716  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 181 - 308
Target Start/End: Complemental strand, 25910618 - 25910491
Alignment:
Q  181 aaggggatgtgaagatgaaaacacaatatagaaatggagagaaacatgtttgatggggtcaattaagtataagatacaccgttcgcgtgataaacacgaa 280  Q
    |||||||||||||||||||||||||  ||| |||||||||||||| ||||||||  |||||| |||| |||||| | | | |||||||||| | ||||||    
T  25910618 aaggggatgtgaagatgaaaacacagcataaaaatggagagaaacgtgtttgataaggtcaactaagcataagaaatagcattcgcgtgattagcacgaa 25910519  T
Q  281 aaagctctcgtgctatttagcatttttc 308  Q
    || | | || ||||||||||||||||||    
T  25910518 aatgttatcctgctatttagcatttttc 25910491  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 26864171 - 26864102
Alignment:
Q  24 gcacaaaacagatgaggggtaggtaatggcaaggg-atcagtgcactgtagcttaaaaagaaaagaagca 92  Q
    |||||||||||||||| |||||||  ||||||||| | ||| ||||||||||||||||||||||||||||    
T  26864171 gcacaaaacagatgagaggtaggtcgtggcaaggggagcagagcactgtagcttaaaaagaaaagaagca 26864102  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 352
Target Start/End: Original strand, 27270266 - 27270305
Alignment:
Q  313 ataatatatgtaaggttcggagtttgaacctcagccacca 352  Q
    |||||||||| ||||||||||||| |||||||||||||||    
T  27270266 ataatatatgcaaggttcggagttcgaacctcagccacca 27270305  T

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Target: scaffold0312 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 313 - 353
Target Start/End: Complemental strand, 7994 - 7954
Alignment:
Q  313 ataatatatgtaaggttcggagtttgaacctcagccaccac 353  Q
    ||||||||||||||||||||||||| ||| || ||||||||    
T  7994 ataatatatgtaaggttcggagtttaaacttcggccaccac 7954  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 313 - 353
Target Start/End: Complemental strand, 20469341 - 20469301
Alignment:
Q  313 ataatatatgtaaggttcggagtttgaacctcagccaccac 353  Q
    |||||||||| ||||||||||||| ||||| ||||||||||    
T  20469341 ataatatatgcaaggttcggagttcgaaccccagccaccac 20469301  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 313 - 353
Target Start/End: Original strand, 422578 - 422618
Alignment:
Q  313 ataatatatgtaaggttcggagtttgaacctcagccaccac 353  Q
    ||||||||||||||||||||||||| ||| || ||||||||    
T  422578 ataatatatgtaaggttcggagtttaaacttcggccaccac 422618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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