View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21580_low_8 (Length: 625)
Name: NF21580_low_8
Description: NF21580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21580_low_8 |
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| [»] chr6 (8 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 319; Significance: 1e-180; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 245 - 625
Target Start/End: Original strand, 2428942 - 2429320
Alignment:
| Q |
245 |
ggttgtgtatgttttgtaacattaaaagaagggttgtaaattgtaatatctttatgtttgaatggagataaagtaatttactccacatagtattgcagta |
344 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2428942 |
ggttgtgtatgttttgtaacattaaaagaagggttgtaaattgtaatatctttatgtttgaatggagataaagtaatttactccacatagtattgcagta |
2429041 |
T |
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| Q |
345 |
aattttacattagtttgtttattcttgtgtccattgtccactaaatacattaaaaacaaaatgttttctagcatcttaaaagtttgtcctaaactannnn |
444 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2429042 |
aattttacattagtttgtttatt---gtgtccattgtccactaaatacagtaaaaacaaaatgttttctagcatcttaaaagtttgtcctaaactatttt |
2429138 |
T |
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| Q |
445 |
nnnaatccttgctcttttgctgtccccacaactctcaactcccc-actctatctttccctataaatcctcacatctctcaaagcacaaatatatagtgac |
543 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
2429139 |
tttaatccttgctcttttgctgtccccacaactctcaactcccccactctatctttccctataaatccccacaactctcaaagcacaaatatatagtgac |
2429238 |
T |
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| Q |
544 |
tagaaaatcatatcatatcattagaaaagaaaagggggccactatgggtagtggtgatcagaaaaatgtttccattaatgat |
625 |
Q |
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| T |
2429239 |
tagaaaatcatatcatatcattagaatagaaaagggggccactatgggtggtggtgatcagaaaaatgtttccattaatgat |
2429320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 2428700 - 2428841
Alignment:
| Q |
1 |
caacactccaacacaagcacaacaacaatatcaaagtgtgctatcttttcaacgcaacttgttaaaaatttnnnnnnntaatattaacatcaaacgcaac |
100 |
Q |
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| T |
2428700 |
caacactccaacacaagcacaacaacaatatcaaagtgtgctatcttttcaacgcaacttgttaaaaattttaaaaaataatattaacatcaaacgcaac |
2428799 |
T |
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| Q |
101 |
gatggttgacagaaagagaaagatggaagatatgacacctgg |
142 |
Q |
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| T |
2428800 |
gatggttgacagaaagagaaagatggaagatatgacacctgg |
2428841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 319 - 469
Target Start/End: Original strand, 2425665 - 2425810
Alignment:
| Q |
319 |
aatttactccacatagtattgcagtaaattttacattagtttgtttattcttgtgtccattgtccactaaatacattaaaaacaaaatgttttctagcat |
418 |
Q |
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|||||| |||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||| | ||||||| |||| ||||||||||| |
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| T |
2425665 |
aatttattccacatagtattgaagtaaatttcacattagtttgttt-----tgtgtccattgtccactaaataaagtaaaaactaaatattttctagcat |
2425759 |
T |
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| Q |
419 |
cttaaaagtttgtcctaaactannnnnnnaatccttgctcttttgctgtcc |
469 |
Q |
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| T |
2425760 |
tttaaaagtttgttctaaactatttttttaatccttgctcttctgctgtcc |
2425810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 6 - 139
Target Start/End: Original strand, 2425390 - 2425521
Alignment:
| Q |
6 |
ctccaacacaagcacaacaacaatatcaaagtgtgctatcttttcaacgcaacttgttaaaaatttnnnnnnntaatattaacatcaaacgcaacgatgg |
105 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||| |||||||||||||| || |||||| |
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| T |
2425390 |
ctccaacacaagcacaacaacaacatcaaagtgtgctatcttttcaacaaaacttgttaataattaagaaaat--atattaacatcaaatgcgacgatga |
2425487 |
T |
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| Q |
106 |
ttgacagaaagagaaagatggaagatatgacacc |
139 |
Q |
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| T |
2425488 |
ttgacggaaagaggaagatggaagatatgacacc |
2425521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 587 - 623
Target Start/End: Complemental strand, 2603245 - 2603209
Alignment:
| Q |
587 |
atgggtagtggtgatcagaaaaatgtttccattaatg |
623 |
Q |
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|||||| |||||||||||||||||||||||||||||| |
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| T |
2603245 |
atgggtggtggtgatcagaaaaatgtttccattaatg |
2603209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 587 - 623
Target Start/End: Complemental strand, 2679969 - 2679933
Alignment:
| Q |
587 |
atgggtagtggtgatcagaaaaatgtttccattaatg |
623 |
Q |
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|||||| |||||||||||||||||||||||||||||| |
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| T |
2679969 |
atgggtggtggtgatcagaaaaatgtttccattaatg |
2679933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 3593192 - 3593130
Alignment:
| Q |
8 |
ccaacacaagcacaacaacaatatcaaagtgtgctatcttttcaacgcaacttgttaaaaatt |
70 |
Q |
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||||||||| |||||||||| || ||||||| |||||||||||| ||||||||||||||| |
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| T |
3593192 |
ccaacacaaacacaacaacattagcaaagtgcattatcttttcaacaaaacttgttaaaaatt |
3593130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 587 - 623
Target Start/End: Complemental strand, 2647526 - 2647490
Alignment:
| Q |
587 |
atgggtagtggtgatcagaaaaatgtttccattaatg |
623 |
Q |
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|||||| || ||||||||||||||||||||||||||| |
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| T |
2647526 |
atgggtggtagtgatcagaaaaatgtttccattaatg |
2647490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 34312458 - 34312396
Alignment:
| Q |
6 |
ctccaacacaagcacaacaacaatatcaaagtgtgctatcttttcaacgcaacttgttaaaaa |
68 |
Q |
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||||||||||||||||||||||||| || |||| |||||||||||| ||||||||||||| |
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| T |
34312458 |
ctccaacacaagcacaacaacaatagcatagtgcactatcttttcaatataacttgttaaaaa |
34312396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 39664196 - 39664260
Alignment:
| Q |
6 |
ctccaacacaagcacaacaacaatatcaaagtgtgctatcttttcaacgcaacttgttaaaaatt |
70 |
Q |
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||||||||||| |||||||| | || ||||||| ||||||||||||| ||||||||||||||| |
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| T |
39664196 |
ctccaacacaaacacaacaatagtagcaaagtgcactatcttttcaacaaaacttgttaaaaatt |
39664260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 70
Target Start/End: Original strand, 19598492 - 19598555
Alignment:
| Q |
7 |
tccaacacaagcacaacaacaatatcaaagtgtgctatcttttcaacgcaacttgttaaaaatt |
70 |
Q |
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||||||| || ||||||||||||| |||| | ||||||||||||| |||||||||||||||| |
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| T |
19598492 |
tccaacataaacacaacaacaatagcaaaatacactatcttttcaacacaacttgttaaaaatt |
19598555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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