View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21580_low_9 (Length: 624)
Name: NF21580_low_9
Description: NF21580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21580_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 444; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 20 - 496
Target Start/End: Original strand, 10587502 - 10587982
Alignment:
| Q |
20 |
gcagtaattttcgtcacactttctgaataattttctgtctatgctgatttgttaaactgttctaatgtaaaaggtaacatgcatcaaagcaaaccaggta |
119 |
Q |
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| T |
10587502 |
gcagtaattttcgtcacactttctgaataattttctgtctatgctgatttgttaaactgttctaatgtaaaaggtaacatgcatcaaagcaaaccaggtg |
10587601 |
T |
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| Q |
120 |
aaaacaacaggatatcttgattgaggattttattacgggtagtacttgtctacttgattaacctagttgactttatttaaactttttacttttcaggttg |
219 |
Q |
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| T |
10587602 |
aaaacaacaggatatcttgattgaggattttattacgggtagtacttgtctacttgattaacctagttgactttatttaaactttttacttttcaggttg |
10587701 |
T |
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| Q |
220 |
agcacgagcatgtctaatgaatgacaggaattagtaccatcttgaaagaacggtgttaatggaaatgaaaagtcgtaaaaaagagacagttcaacactgt |
319 |
Q |
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| T |
10587702 |
agcacgagcatgtctaatgaatgacaggaattagtaccatcttgaaagaacggtgttaatggaaatgaaaagtcgtaaaaaagagacagttcaacaatgt |
10587801 |
T |
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| Q |
320 |
tcaatgtgttaaaaggtaaccccattataattctggctggcctaacaggttaaggaccaagcaaaaggaactaacgtacttgaggttcctttcaaaaact |
419 |
Q |
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| T |
10587802 |
tcaatgtgttaaaaggtaaccccattataattctggctggcctaacaggttaaggaccaagcaaaaggaactaacgtacttgaggttcctttcaaaaact |
10587901 |
T |
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| Q |
420 |
atttacaaaccttgacc----taatggaaattggctgcagactttcaggaaatgttaagggcgggaaagataaagagatta |
496 |
Q |
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| T |
10587902 |
atttacaaaccttgacctaattaatggaaattggctactgactttcaggaaatgttatgggcgggaaagataaagagatta |
10587982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 547 - 603
Target Start/End: Original strand, 10587986 - 10588042
Alignment:
| Q |
547 |
tttaaatatgaagaagtcggatgttcgaaattcaaattctagccctacatatattat |
603 |
Q |
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| T |
10587986 |
tttaaaaatggagaagtcggatgttcgagattcaaattttacccctacatatattat |
10588042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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