View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21581_high_1 (Length: 569)

Name: NF21581_high_1
Description: NF21581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21581_high_1
NF21581_high_1
[»] chr5 (6 HSPs)
chr5 (29-541)||(37704454-37704966)
chr5 (177-540)||(37698974-37699349)
chr5 (237-541)||(37437520-37437823)
chr5 (293-541)||(37698636-37698864)
chr5 (77-119)||(30384256-30384298)
chr5 (82-118)||(1630012-1630048)
[»] chr4 (2 HSPs)
chr4 (177-413)||(16840857-16841109)
chr4 (77-117)||(31095092-31095132)
[»] chr6 (2 HSPs)
chr6 (75-117)||(17411089-17411131)
chr6 (75-118)||(196244-196287)
[»] chr8 (1 HSPs)
chr8 (72-117)||(18080600-18080645)
[»] chr3 (1 HSPs)
chr3 (75-118)||(44291420-44291463)
[»] chr7 (2 HSPs)
chr7 (80-118)||(12422352-12422390)
chr7 (75-107)||(32857805-32857837)


Alignment Details
Target: chr5 (Bit Score: 457; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 29 - 541
Target Start/End: Complemental strand, 37704966 - 37704454
Alignment:
Q  29 acgaaaaatacttacataactaacttgttttttgagcaactacataactaacttgttataattaaataacttaaatgacgtaagtgatacgnnnnnnnnn 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||             
T  37704966 acgaaaaatacttacataactaacttgttttttgagcaactacataactaacttgttataattaaataacttaaatgacgcaagtgatacgaaaaaatct 37704867  T
Q  129 nnnnnnnccgatttgttataattaaataacttaaaagtatcgtaatttgctctttaaagtatgtacatttgaagaagtctaagtctccgattctaaatac 228  Q
           ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37704866 taaaaaaccgatttgttataattaaataacttaaaagtctcgtaatttgctctttaaagtatgtacatttgaagaagtctaagtctccgattctaaatac 37704767  T
Q  229 aattaatgttattttcttcatttcaggtgtatttttaagcacattactcactgtgattgctacttaaatgaatttgttatcttatcacaacttgaaataa 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37704766 aattaatgttattttcttcatttcaggtgtatttttaagcacattactcactgtgattgctacttaaatgaatttgttatcttatcacaacttgaaataa 37704667  T
Q  329 gattccaactttcgtgctaattacgttcaaaaagtctggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaatta 428  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37704666 gattccaactttcgtgctaattacgttcaaaaagtctggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaatta 37704567  T
Q  429 atattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaatttgcaaacaatctaataagt 528  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37704566 atattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaatttgcaaacaatctaataagt 37704467  T
Q  529 caacctttttggt 541  Q
    |||||||||||||    
T  37704466 caacctttttggt 37704454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 177 - 540
Target Start/End: Complemental strand, 37699349 - 37698974
Alignment:
Q  177 gctctttaaagtatgtacatttgaagaagtctaagtctccgattctaaatacaattaatgtt------attttcttcatttcaggtgtatttttaagcac 270  Q
    |||||||||||| ||| || ||||||||||||||||||||| | ||||||||||||||||||      ||||||||||||| |||||||||||||||||     
T  37699349 gctctttaaagtctgttcagttgaagaagtctaagtctccgttgctaaatacaattaatgttgttattattttcttcattttaggtgtatttttaagcaa 37699250  T
Q  271 attactcactgtgattgctacttaaatgaatttgttatcttat---cacaacttgaaataagattccaactttcgtgctaattacgttcaaaaagtct-g 366  Q
    |||||||| | ||||||||||||||||||||||||||||||||   ||||||||| ||||||||||||||||| ||||||||||||||| |||||||| |    
T  37699249 attactcattctgattgctacttaaatgaatttgttatcttattatcacaacttgcaataagattccaactttagtgctaattacgttcgaaaagtcttg 37699150  T
Q  367 gtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatga 466  Q
    || ||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  37699149 gttttccaagatgttatttagtttaatgaacaccaaacttttctatgattgttactgaattaatattgttgccaaatgtcatatcagtatacggttatga 37699050  T
Q  467 aaagcacccccaaaacaaaataagggaatacgtagactcaa--tttgcaaacaatctaataagtcaacctttttgg 540  Q
    ||||||||||||| ||||||||||||||||| |||||||||  |||| |||||||||||||| |||| ||||||||    
T  37699049 aaagcacccccaacacaaaataagggaatacctagactcaatgtttgtaaacaatctaataactcaaactttttgg 37698974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 237 - 541
Target Start/End: Complemental strand, 37437823 - 37437520
Alignment:
Q  237 ttattttcttcatttcaggtgtatttttaagcacattactcactgtgattgctacttaaatgaatttgttatcttat---cacaacttgaaataagattc 333  Q
    ||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||   ||||||||| ||||||||||    
T  37437823 ttattttcttcatttcaggtgtatttttaagcaaattactcattctgattgctacttaaatgaatttgttatcttattatcacaacttgcaataagattc 37437724  T
Q  334 caactttcgtgctaattacgttcaaaaagtct-ggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaattaatat 432  Q
    ||||||    ||||||||||||| |||||||| ||||||| || || |||||||||||||||||||||||||||||||||||| |||| |||||||||||    
T  37437723 caactt----gctaattacgttcgaaaagtcttggtcttccaatatgttatttagtttaatgaacaccaaacttttctatgattgttattgaattaatat 37437628  T
Q  433 tgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaac 532  Q
    ||||||||| |||||||||| |||| | |||||||||||| ||||| |  |||| |||||||||  |||||| |||||| ||||||||||||||||||      
T  37437627 tgttgccaattgtcatatcactatacggttatgaaaagca-ccccacattaaaacaagggaatagctagactgaatttgtaaacaatctaataagtcaga 37437529  T
Q  533 ctttttggt 541  Q
    |||||||||    
T  37437528 ctttttggt 37437520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 293 - 541
Target Start/End: Complemental strand, 37698864 - 37698636
Alignment:
Q  293 taaatgaatttgttatcttatcacaacttgaaataagattccaactttcgtgc----taattacgttcaaaaagtc-tggtcttcgaagatattatttag 387  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| ||||    |||||||||| |||||||| |||||||| ||||| ||||||||    
T  37698864 taaatgaatttgttatcttatcacaacttgcaataagattccaactttagtgctaattaattacgttaaaaaagtcttggtcttccaagatgttatttag 37698765  T
Q  388 tttaatgaacaccaaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaat 487  Q
    ||||| ||||||||||||||| |||||| |        |||||||||||||||| |||||||||| |||| | |                  ||||||||    
T  37698764 tttaacgaacaccaaacttttgtatgattg--------ttaatattgttgccaattgtcatatcactatacggt-----------------caacaaaat 37698690  T
Q  488 aagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttggt 541  Q
    |||||||||| ||||||||||||| ||||||||||||||||||| |||||||||    
T  37698689 aagggaatacttagactcaatttgtaaacaatctaataagtcaaactttttggt 37698636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 77 - 119
Target Start/End: Complemental strand, 30384298 - 30384256
Alignment:
Q  77 taacttgttataattaaataacttaaatgacgtaagtgatacg 119  Q
    |||||||||| |||||||||||||||| ||||||||| |||||    
T  30384298 taacttgttacaattaaataacttaaaagacgtaagtaatacg 30384256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 82 - 118
Target Start/End: Original strand, 1630012 - 1630048
Alignment:
Q  82 tgttataattaaataacttaaatgacgtaagtgatac 118  Q
    |||||| ||||||||||||||| ||||||||||||||    
T  1630012 tgttatgattaaataacttaaaagacgtaagtgatac 1630048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 177 - 413
Target Start/End: Original strand, 16840857 - 16841109
Alignment:
Q  177 gctctttaaagtatgtacatttgaagaagtctaagtctccgattctaaatacaattaatgtt------attttcttcatttcaggtgtat----ttttaa 266  Q
    ||||||||||||||| | | |||| |||||||||||||||| ||||||||||| ||||||||      ||||||||||||||||||||||    ||||||    
T  16840857 gctctttaaagtatggatagttgacgaagtctaagtctccgcttctaaatacatttaatgttgttattattttcttcatttcaggtgtatatatttttaa 16840956  T
Q  267 gcacattactcactgtgattgctacttaaatgaatttgttatcttat------cacaacttgaaataagattccaactttcgtgctaattacgttcaaaa 360  Q
    ||| |||| ||| |||||||| |||||||||||||||||||||||||      ||||||||| ||||||||||||||||  |||||||||||||||||||    
T  16840957 gcaaattattcattgtgattggtacttaaatgaatttgttatcttattaatatcacaacttgcaataagattccaactta-gtgctaattacgttcaaaa 16841055  T
Q  361 agtct-ggtcttcgaagatattatttagtttaatgaacaccaaacttttctatg 413  Q
    ||||| ||||||| ||||| |||||||||||| | |||||||||||||| ||||    
T  16841056 agtcttggtcttccaagattttatttagtttattaaacaccaaacttttgtatg 16841109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 117
Target Start/End: Complemental strand, 31095132 - 31095092
Alignment:
Q  77 taacttgttataattaaataacttaaatgacgtaagtgata 117  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  31095132 taacttgttataattaaataacttaaaggacgtaagtgata 31095092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 75 - 117
Target Start/End: Complemental strand, 17411131 - 17411089
Alignment:
Q  75 actaacttgttataattaaataacttaaatgacgtaagtgata 117  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  17411131 actaacttgttacaattaaataacttaaatgacgtaagtgata 17411089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 118
Target Start/End: Original strand, 196244 - 196287
Alignment:
Q  75 actaacttgttataattaaataacttaaatgacgtaagtgatac 118  Q
    ||||| || ||| |||||||||||||||||||||||||||||||    
T  196244 actaaattattacaattaaataacttaaatgacgtaagtgatac 196287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 72 - 117
Target Start/End: Complemental strand, 18080645 - 18080600
Alignment:
Q  72 ataactaacttgttataattaaataacttaaatgacgtaagtgata 117  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||    
T  18080645 ataactaacttattacaattaaataacttaaatgacgtaagtgata 18080600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 118
Target Start/End: Original strand, 44291420 - 44291463
Alignment:
Q  75 actaacttgttataattaaataacttaaatgacgtaagtgatac 118  Q
    |||||||||||| |||||||||||||||| ||| ||||||||||    
T  44291420 actaacttgttacaattaaataacttaaaggacataagtgatac 44291463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 12422352 - 12422390
Alignment:
Q  80 cttgttataattaaataacttaaatgacgtaagtgatac 118  Q
    ||||||| |||||||||||||||| ||||||||||||||    
T  12422352 cttgttaaaattaaataacttaaaagacgtaagtgatac 12422390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 75 - 107
Target Start/End: Complemental strand, 32857837 - 32857805
Alignment:
Q  75 actaacttgttataattaaataacttaaatgac 107  Q
    |||||||||||| ||||||||||||||||||||    
T  32857837 actaacttgttacaattaaataacttaaatgac 32857805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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