View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21581_high_13 (Length: 352)
Name: NF21581_high_13
Description: NF21581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21581_high_13 |
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| [»] scaffold0025 (1 HSPs) |
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| [»] scaffold0022 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 350
Target Start/End: Complemental strand, 9449769 - 9449427
Alignment:
| Q |
14 |
agagaaaaacggttaggttcagaaccactctcagagagagtgctctgataccatattatgaaacaatagaaaaggaacatgaatcttcattattgtgtaa |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
9449769 |
agagaaaaacggttaggttcagaaccactctcagagagagtgctctgataccatattatgaaacaatagaaaaggaacatgaatcttcattattgtgtga |
9449670 |
T |
|
| Q |
114 |
gagatggagtacaatcaa--------tatatatataggcatat-tctaattgtacaa-cac-taatctaattgcactacgctaacagaaagtacaatcaa |
202 |
Q |
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|||||||||||||||||| |||||||||| |||| | || | || | | | || |||||||| ||||| |||||||||||||||||||| |
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| T |
9449669 |
gagatggagtacaatcaatatatatatatatatatatatatatatatatatatatatgcgcatattctaattgtactacactaacagaaagtacaatcaa |
9449570 |
T |
|
| Q |
203 |
agatagaatacaaagattacttgtactgcaagttattatccttaatcccattcttctcatatatatgattagtgtataatagaatgagccgatcttaaaa |
302 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
9449569 |
agatagaatacaaagattacttg-----caagttattatccttaatctcattcttctcatatatatgattagtgtataatagaatgagccgattttaaaa |
9449475 |
T |
|
| Q |
303 |
gtgtcagcgggcgaacagttaactattacaatgtatttaaggtaatga |
350 |
Q |
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||||||||||| ||||||||||||||||| |||||||||||| ||||| |
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| T |
9449474 |
gtgtcagcgggagaacagttaactattacgatgtatttaagggaatga |
9449427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 66 - 284
Target Start/End: Complemental strand, 9450232 - 9450012
Alignment:
| Q |
66 |
atattatgaaacaatagaaaaggaacatgaatcttcattattgtgtaagagatggagtacaatca--atatatatataggcatattctaattgtacaaca |
163 |
Q |
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| T |
9450232 |
atattatgaaacaatagaaaaggaaaatgaatctttattattgtgtaagagatggagtacaatcactatatatatataggcatattctaactgtactaca |
9450133 |
T |
|
| Q |
164 |
ctaatctaattgcactacgctaacagaaagtacaatcaaagatagaatacaaagattacttgtactgcaagttattatccttaatcccattcttctcata |
263 |
Q |
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||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
9450132 |
ctaatctaattttactacactaacagaaagtacaatcaaagatagaatacaaagattacttgtactgcaagttattatccttaatctcgttcttctcatc |
9450033 |
T |
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| Q |
264 |
tatatgattagtgtataatag |
284 |
Q |
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|||||| ||||||| |||||| |
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| T |
9450032 |
tatatgtttagtgtgtaatag |
9450012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 40333222 - 40333150
Alignment:
| Q |
14 |
agagaaaaacggttaggttcagaaccactctcagagagagtgctctgataccatattatgaaacaatagaaaa |
86 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
40333222 |
agagaaaaacggttaggatcagaactactctcaaagagagtgctctgataccatattatgaaacaatagaaaa |
40333150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 15811047 - 15811166
Alignment:
| Q |
18 |
aaaaacggttaggttcagaaccactctcagagagagtgctctgataccatattatgaaacaatagaaaaggaacatgaatcttcattattgtgtaagaga |
117 |
Q |
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|
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| | | | |||||||||||||| ||||| ||| |
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| T |
15811047 |
aaaaacggttaggttcagaaccactctcaaagaga--gctctgataccatattatgaaacaatagaaatgagaaaagaatcttcattattatgtaataga |
15811144 |
T |
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| Q |
118 |
tggagtacaatcaatatatata |
139 |
Q |
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||||||||||| |||||||| |
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| T |
15811145 |
gagagtacaatcagtatatata |
15811166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 4575036 - 4575125
Alignment:
| Q |
19 |
aaaacggttaggttcagaaccactctcagagagagtgctctgataccatattatgaaacaatagaaaaggaacatgaatcttcattattg |
108 |
Q |
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|||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||| |
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| T |
4575036 |
aaaacggttaggatcagaactactctcaaagagagtgctctgataccatattatgaaacaatagaaaactgaaatgattcttcattattg |
4575125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 42 - 139
Target Start/End: Original strand, 2169 - 2266
Alignment:
| Q |
42 |
tctcagagagagtgctctgataccatattatgaaacaatagaaaaggaacatgaatcttcattattgtgtaagagatggagtacaatcaatatatata |
139 |
Q |
| |
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||||| |||||| ||||||||||||||||||||||||| |||| | | | ||||||| |||||||||||| ||| |||||||||||| |||||||| |
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| T |
2169 |
tctcaaagagagggctctgataccatattatgaaacaaaggaaatgagaaaagaatcttaattattgtgtaatagagggagtacaatcagtatatata |
2266 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 246
Target Start/End: Original strand, 167715 - 167862
Alignment:
| Q |
94 |
gaatcttcattattgtgtaagagatggagtacaatcaatatatatataggcatattctaattgtacaacactaatctaattgcactacgctaacagaaag |
193 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||| |||||||| || || ||||||||||| |||||| | | ||| ||||| |||| ||||| |
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| T |
167715 |
gaatcttcattattgtgtaatagagggagtacaatcagtatatata---gc-taatctaattgtactacactacacaagttgtactacactaatggaaag |
167810 |
T |
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| Q |
194 |
tacaatcaaagatagaatacaaagattacttgtactgcaagttattatcctta |
246 |
Q |
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|||||| | | || | || | |||||||||| ||||||| |||||||||||| |
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| T |
167811 |
tacaat-acaaatgaattatagagattacttgcactgcaaattattatcctta |
167862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 284
Target Start/End: Complemental strand, 19117563 - 19117490
Alignment:
| Q |
211 |
tacaaagattacttgtactgcaagttattatccttaatcccattcttctcatatatatgattagtgtataatag |
284 |
Q |
| |
|
|||| |||||||||| ||||||||||||| ||||||| | ||||| |||||| | |||| ||||||| |||||| |
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| T |
19117563 |
tacagagattacttgcactgcaagttattttccttaagctcattcatctcatttgtatgcttagtgtgtaatag |
19117490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 107
Target Start/End: Original strand, 29556121 - 29556163
Alignment:
| Q |
65 |
catattatgaaacaatagaaaaggaacatgaatcttcattatt |
107 |
Q |
| |
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|||||||||||||||||||||| || |||||||||||||||| |
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|
| T |
29556121 |
catattatgaaacaatagaaaactaaaatgaatcttcattatt |
29556163 |
T |
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