View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21581_high_14 (Length: 346)
Name: NF21581_high_14
Description: NF21581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21581_high_14 |
 | |
|
| [»] scaffold0105 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 79 - 336
Target Start/End: Complemental strand, 1182334 - 1182077
Alignment:
| Q |
79 |
tttcttctaatagtccatttaagaatcaagacttcgcatctaaatgaaacaatgaccatttcttactgctatctaatgcaacaaccaatctcccattttc |
178 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1182334 |
tttcttctaatagtccatttaagaatcaagacttcacatctaaatgaaacaatgatcatttcttactgctatctaatgcaacaaccaatctcccattttc |
1182235 |
T |
|
| Q |
179 |
taatcttgccactagtgcaaactcttcattataatcaacaccatatctctgcaggaagcctctagccactagccttgctttgtgttttgaaactgtgcca |
278 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1182234 |
taatcttgccactagtgcaaacacttcattataatcaacaccatatcgctgcaggaagcctctagccactagccttgctttgtgttttgaaactgtgcca |
1182135 |
T |
|
| Q |
279 |
tctggattcatttttaccttgaaaattcatttcacatcaatggttttcttcttctctg |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1182134 |
tctggattcatttttaccttgaaaattcatttcacatcaatggttttcttcttctctg |
1182077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 204 - 331
Target Start/End: Complemental strand, 18194180 - 18194053
Alignment:
| Q |
204 |
tcattataatcaacaccatatctctgcaggaagcctctagccactagccttgctttgtgttttgaaactgtgccatctggattcatttttaccttgaaaa |
303 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||| ||||||||||||| || ||||||| ||| || | || ||||| ||||||| ||| |||||||||| |
|
|
| T |
18194180 |
tcattatagtcaacaccatatctctgtaggaaacctctagccactaatctggctttgtatttagagattgaaccatcaggattcaatttcaccttgaaaa |
18194081 |
T |
|
| Q |
304 |
ttcatttcacatcaatggttttcttctt |
331 |
Q |
| |
|
| ||||| |||||||||||||||||||| |
|
|
| T |
18194080 |
tccatttaacatcaatggttttcttctt |
18194053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 1182371 - 1182340
Alignment:
| Q |
1 |
aaagtgtcttatgcagttcgtataccatatgc |
32 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
1182371 |
aaagtgtcttatgcagttcgtataccatatgc |
1182340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 24 - 332
Target Start/End: Original strand, 8169513 - 8169821
Alignment:
| Q |
24 |
accatatgctcctttacttttacttcaaatcctggaggttgagtaacatatacactttcttctaatagtccatttaagaatcaagacttcgcatctaaat |
123 |
Q |
| |
|
|||||||||||| || || | | |||||||| | |||||| ||||||||||| | ||||||| ||||||||||||| |||| |||||| ||||||||| |
|
|
| T |
8169513 |
accatatgctcccttcctctgatttcaaatcttagaggttcagtaacatatatagtttcttccaatagtccatttaggaatgcagactttacatctaaat |
8169612 |
T |
|
| Q |
124 |
gaaacaatgaccatttcttactgctatctaatgcaacaaccaatctcccattttctaatcttgccactagtgcaaactcttcattataatcaacaccata |
223 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||||||||| |||||| |||| ||| ||||||| |||||||||| |||| |||| |
|
|
| T |
8169613 |
gaaacaatgaccatttcttactgctggttaatgcaataaccaatctcaatatttctatccttgatactggtgcaaagacttcattatagtcaatttcata |
8169712 |
T |
|
| Q |
224 |
tctctgcaggaagcctctagccactagccttgctttgtgttttgaaactgtgccatctggattcatttttaccttgaaaattcatttcacatcaatggtt |
323 |
Q |
| |
|
| || |||||||||||||| ||||| ||||||||||| ||||||| |||| ||| |||||||| ||| || |||||||| |||||||||| |||| || |
|
|
| T |
8169713 |
ttaatgtaggaagcctctagctactagtcttgctttgtgctttgaaaatgtgtcatttggattcaatttgactttgaaaatccatttcacattaatgttt |
8169812 |
T |
|
| Q |
324 |
ttcttcttc |
332 |
Q |
| |
|
||||||||| |
|
|
| T |
8169813 |
ttcttcttc |
8169821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 331
Target Start/End: Original strand, 32369179 - 32369486
Alignment:
| Q |
24 |
accatatgctcctttacttttacttcaaatcctggaggttgagtaacatatacactttcttctaatagtccatttaagaatcaagacttcgcatctaaat |
123 |
Q |
| |
|
|||| ||||||||| |||||||||||||| | || ||||| |||||||| | | |||||||||| ||||||| | ||| |||||| |||||| || |
|
|
| T |
32369179 |
accacatgctccttcccttttacttcaaattcaggtggttgtgtaacatacatatcttcttctaatggtccattcagaaatgcagacttaacatctatat |
32369278 |
T |
|
| Q |
124 |
gaaacaatgaccatttcttactgctatctaatgcaacaaccaatctcccattttctaatcttgccactagtgcaaactcttcattataatcaacaccata |
223 |
Q |
| |
|
|| | |||||||| ||||| || | | | ||| || |||||||| | |||||||| | || ||| | ||||| | |||||||| ||||||||||| |
|
|
| T |
32369279 |
gagataatgaccaattcttgctacaggccagtgccaccaccaatcttatagtttctaatttagctactggagcaaatacctcattatagtcaacaccata |
32369378 |
T |
|
| Q |
224 |
tctctgcaggaagcctctagccactagccttgctttgtgttttgaaactgtgccatctggattcatttttaccttgaaaattcatttcacatcaatggtt |
323 |
Q |
| |
|
||||| | ||| ||||| || || | || ||||||| ||| |||| || |||| ||||||| ||| || |||||||| ||||| |||||||||||| |
|
|
| T |
32369379 |
tctctataagaaacctctggcaaccaatctggctttgtatttggaaaatgattcatcaggattcaatttcactttgaaaatccatttaacatcaatggtt |
32369478 |
T |
|
| Q |
324 |
ttcttctt |
331 |
Q |
| |
|
|||||||| |
|
|
| T |
32369479 |
ttcttctt |
32369486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 24 - 331
Target Start/End: Original strand, 4959145 - 4959452
Alignment:
| Q |
24 |
accatatgctcctttacttttacttcaaatcctggaggttgagtaacatatacactttcttctaatagtccatttaagaatcaagacttcgcatctaaat |
123 |
Q |
| |
|
||||||||||||||| | ||||||||||| |||| ||||| | || ||| ||| |||||| | | ||||||| | ||| |||||| ||||||||| |
|
|
| T |
4959145 |
accatatgctcctttccacttacttcaaatactggtggttgtgcaatatacacatcttcttcaagtggtccattcagaaatgcagactttacatctaaat |
4959244 |
T |
|
| Q |
124 |
gaaacaatgaccatttcttactgctatctaatgcaacaaccaatctcccattttctaatcttgccactagtgcaaactcttcattataatcaacaccata |
223 |
Q |
| |
|
| | |||||||| || |||||||| | | ||| || |||||||| | |||||| ||| || ||| | ||||| | |||||||| || |||||||| |
|
|
| T |
4959245 |
gtgataatgaccagtttttactgcttacaagtgccactaccaatctaatagtttctagtctagcaactggagcaaatacctcattatagtctacaccata |
4959344 |
T |
|
| Q |
224 |
tctctgcaggaagcctctagccactagccttgctttgtgttttgaaactgtgccatctggattcatttttaccttgaaaattcatttcacatcaatggtt |
323 |
Q |
| |
|
|||||| ||||| |||||||| |||| || ||||||| ||| || | || ||||| |||||| ||| ||||||||||| ||||| |||||||||||| |
|
|
| T |
4959345 |
tctctgtaggaaacctctagcaactaatctggctttgtatttagagattgacccatcatgattcaatttcaccttgaaaatccatttaacatcaatggtt |
4959444 |
T |
|
| Q |
324 |
ttcttctt |
331 |
Q |
| |
|
|||||||| |
|
|
| T |
4959445 |
ttcttctt |
4959452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 315
Target Start/End: Complemental strand, 17153 - 17071
Alignment:
| Q |
233 |
gaagcctctagccactagccttgctttgtgttttgaaactgtgccatctggattcatttttaccttgaaaattcatttcacat |
315 |
Q |
| |
|
||||||| |||| |||| |||||||||||| ||||||| |||||||| || ||||| || || |||||||| ||||| |||| |
|
|
| T |
17153 |
gaagcctttagctactaaccttgctttgtgctttgaaagtgtgccatttgtattcagcttgactttgaaaatccattttacat |
17071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 315
Target Start/End: Complemental strand, 8190578 - 8190496
Alignment:
| Q |
233 |
gaagcctctagccactagccttgctttgtgttttgaaactgtgccatctggattcatttttaccttgaaaattcatttcacat |
315 |
Q |
| |
|
||||||| |||| |||| |||||||||||| ||||||| |||||||| || ||||| || || |||||||| ||||| |||| |
|
|
| T |
8190578 |
gaagcctttagctactaaccttgctttgtgctttgaaagtgtgccatttgtattcagcttgactttgaaaatccattttacat |
8190496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University