View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21581_high_20 (Length: 319)

Name: NF21581_high_20
Description: NF21581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21581_high_20
NF21581_high_20
[»] chr5 (2 HSPs)
chr5 (1-318)||(33814557-33814874)
chr5 (1-130)||(33809826-33809956)
[»] scaffold0479 (1 HSPs)
scaffold0479 (1-318)||(657-974)
[»] chr4 (1 HSPs)
chr4 (1-318)||(9754277-9754594)
[»] chr3 (3 HSPs)
chr3 (1-318)||(54969173-54969490)
chr3 (6-288)||(4283994-4284273)
chr3 (260-318)||(13563709-13563767)
[»] chr7 (2 HSPs)
chr7 (1-198)||(4837507-4837704)
chr7 (227-318)||(4837703-4837794)
[»] chr6 (1 HSPs)
chr6 (1-135)||(1130085-1130219)


Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 33814874 - 33814557
Alignment:
Q  1 ccaccggtgagaatatttcttcaaaatcaatgcctttcttttgatggcaccccttcacaacaattcgtgctttgtacctggggtttgggttgttctcttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  33814874 ccaccggtgagaatatttcttcaaaatcaatgcctttcttttgatggcaccccttcacaacaattcgtgctttgtacttggggtttgggttgttctcttc 33814775  T
Q  101 agacttgagtttgaacacccatttatttttcaatgccctttttccatctggtaattttaccaggtcatacgtctcattctcctttagggatttcatctct 200  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33814774 agacttgagtttgaacacccatttatttttcaatgccctctttccatctggtaattttaccaggtcatacgtctcattctcctttagggatttcatctct 33814675  T
Q  201 tcttccatggattgcaaccatttttccttattggttatctctatagcttccatgaagctttgaggttccccttcctcagtgaaatttacatattcacctg 300  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33814674 tcttccatggattgtaaccatttttccttattggttgtctctatagcttccatgaagctttgaggttccccttcctcagtgaaatttacatattcacctg 33814575  T
Q  301 agaaatatcttcttgatg 318  Q
    |||| |||||| ||||||    
T  33814574 agaagtatctttttgatg 33814557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 33809956 - 33809826
Alignment:
Q  1 ccaccggtgagaatatttcttcaaaatcaatgcctttcttttgatgg-caccccttcacaacaattcgtgctttgtacctggggtttgggttgttctctt 99  Q
    ||||||| || || |||| ||||||||||||||||||||||||| || |||||||||||| |||||| |||||||||| ||||| |||||||| || |||    
T  33809956 ccaccggggaaaacattttttcaaaatcaatgcctttcttttgaagggcaccccttcacaccaattcatgctttgtacttgggggttgggttg-tccctt 33809858  T
Q  100 cagacttg-agtttgaacacccatttattttt 130  Q
     | | ||| |||||||| ||||||||||||||    
T  33809857 taaaattgaagtttgaaaacccatttattttt 33809826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 974 - 657
Alignment:
Q  1 ccaccggtgagaatatttcttcaaaatcaatgcctttcttttgatggcaccccttcacaacaattcgtgctttgtacctggggtttgggttgttctcttc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||| |||||||||||||||||    
T  974 ccaccggtgagaatatttcttcaaaatcaatgcctttcttttgatggcaccccttcacgactattcgtgctttgtatctgggatttgggttgttctcttc 875  T
Q  101 agacttgagtttgaacacccatttatttttcaatgccctttttccatctggtaattttaccaggtcatacgtctcattctcctttagggatttcatctct 200  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  874 agacttgagtttgaacacccatttatttttcaatgccctctttccatctggtaattttaccaggtcatacgtttcattctcctttagggattgcatctct 775  T
Q  201 tcttccatggattgcaaccatttttccttattggttatctctatagcttccatgaagctttgaggttccccttcctcagtgaaatttacatattcacctg 300  Q
    |||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||| |||||||  ||||| ||||||||||||||||    
T  774 tcttccatggattgcaaccatttttctttattggttgtctctatggcttccatgaagctttgaggttcgccttcctttgtgaagtttacatattcacctg 675  T
Q  301 agaaatatcttcttgatg 318  Q
    |||| |||||||||||||    
T  674 agaagtatcttcttgatg 657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 9754277 - 9754594
Alignment:
Q  1 ccaccggtgagaatatttcttcaaaatcaatgcctttcttttgatggcaccccttcacaacaattcgtgctttgtacctggggtttgggttgttctcttc 100  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||| |||||||||||||||||    
T  9754277 ccaccgatgagaatatttcttcaaaatcaatgcctttcttttgatggcaccccttcacgactattcgtgctttgtatctgggatttgggttgttctcttc 9754376  T
Q  101 agacttgagtttgaacacccatttatttttcaatgccctttttccatctggtaattttaccaggtcatacgtctcattctcctttagggatttcatctct 200  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  9754377 agacttaagtttgaacacccatttatttttcaatgccctctttccatttggcaattttaccaggtcatacgtctcattctcctttagggattgcatctct 9754476  T
Q  201 tcttccatggattgcaaccatttttccttattggttatctctatagcttccatgaagctttgaggttccccttcctcagtgaaatttacatattcacctg 300  Q
    ||||||||||||| |||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9754477 tcttccatggattacaaccatttttctttattggttgtctctatggcttccatgaagctttgaggttccccttcctcagtgaagtttacatattcacctg 9754576  T
Q  301 agaaatatcttcttgatg 318  Q
    |||| |||||||||||||    
T  9754577 agaagtatcttcttgatg 9754594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 54969173 - 54969490
Alignment:
Q  1 ccaccggtgagaatatttcttcaaaatcaatgcctttcttttgatggcaccccttcacaacaattcgtgctttgtacctggggtttgggttgttctcttc 100  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| || |||||||| ||||| ||||| |||||||||||||||||    
T  54969173 ccaccggtgagaatatttcttcaaaatcaacgtctttcttttgatggcaccccttcacgactattcgtgccttgtatctgggatttgggttgttctcttc 54969272  T
Q  101 agacttgagtttgaacacccatttatttttcaatgccctttttccatctggtaattttaccaggtcatacgtctcattctcctttagggatttcatctct 200  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||    
T  54969273 agacttgagtttaaacacccatttatttttcaatgccctctttccatctggtaatttgaccaggtcatacgtgtcattctcctttagggattgcatctct 54969372  T
Q  201 tcttccatggattgcaaccatttttccttattggttatctctatagcttccatgaagctttgaggttccccttcctcagtgaaatttacatattcacctg 300  Q
    |||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||    
T  54969373 tcttccatggattgcaaccatttttctttattggttgtctctatggcttccatgaagctttgaggttcgccttcctcggtgaagtttacatattcacctg 54969472  T
Q  301 agaaatatcttcttgatg 318  Q
    |||| |||||||||||||    
T  54969473 agaagtatcttcttgatg 54969490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 6 - 288
Target Start/End: Original strand, 4283994 - 4284273
Alignment:
Q  6 ggtgagaatatttcttcaaaatcaatgcctttcttttgatggcaccccttcacaacaattcgtgctttgtacctggggtttgggttgttctcttcagact 105  Q
    ||||||||| ||||||||||||||||||||||||||||||||||  ||||||| ||   ||||||||||||||| ||||||| |||||||| |||||||     
T  4283994 ggtgagaatttttcttcaaaatcaatgcctttcttttgatggcattccttcacgac---tcgtgctttgtacctagggtttgagttgttctattcagaca 4284090  T
Q  106 tgagtttgaacacccatttatttttcaatgccctttttccatctggtaattttaccaggtcatacgtctcattctcctttagggatttcatctcttcttc 205  Q
    |||| |||||||||| |||||||||||||||||| |||||||   |||||||||||| |||||| || |  |||||||||||||||  ||| |||||||     
T  4284091 tgagcttgaacacccgtttatttttcaatgccctatttccattcagtaattttaccaagtcatatgtttggttctcctttagggatggcatttcttcttg 4284190  T
Q  206 catggattgcaaccatttttccttattggttatctctatagcttccatgaagctttgaggttccccttcctcagtgaaattta 288  Q
     ||| |||||| |||||||| |||||||||| ||||||| |||||||||| |||||||||||||| ||| | ||| |||||||    
T  4284191 aatgcattgcagccatttttgcttattggttgtctctatggcttccatgatgctttgaggttccctttcattagtaaaattta 4284273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 260 - 318
Target Start/End: Original strand, 13563709 - 13563767
Alignment:
Q  260 ttgaggttccccttcctcagtgaaatttacatattcacctgagaaatatcttcttgatg 318  Q
    ||||||||| ||||||| |||||| |||||||||||||||||||| |||||||||||||    
T  13563709 ttgaggttcgccttccttagtgaagtttacatattcacctgagaagtatcttcttgatg 13563767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 4837507 - 4837704
Alignment:
Q  1 ccaccggtgagaatatttcttcaaaatcaatgcctttcttttgatggcaccccttcacaacaattcgtgctttgtacctggggtttgggttgttctcttc 100  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||| ||||||||||  |||| |||||||||||||||||    
T  4837507 ccactggtgagaatatttcttcaaaatcaatgcctttctttcgatggcaccccttcacgactatttgtgctttgtatatgggatttgggttgttctcttc 4837606  T
Q  101 agacttgagtttgaacacccatttatttttcaatgccctttttccatctggtaattttaccaggtcatacgtctcattctcctttagggatttcatct 198  Q
    ||||||||||||||||||||| || |||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  4837607 agacttgagtttgaacacccacttgtttttcaacgccctctttccatctggtaattttaccagatcatacgtctcattctcctttagggattgcatct 4837704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 227 - 318
Target Start/End: Original strand, 4837703 - 4837794
Alignment:
Q  227 cttattggttatctctatagcttccatgaagctttgaggttccccttcctcagtgaaatttacatattcacctgagaaatatcttcttgatg 318  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||| ||||||    
T  4837703 cttattggttgtctctatggcttccatgaagctttgaggttccccttcctcagtgaagtttacatattcaactgagaagtatctttttgatg 4837794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 1130085 - 1130219
Alignment:
Q  1 ccaccggtgagaatatttcttcaaaatcaatgcctttcttttgatggcaccccttcacaacaattcgtgctttgtacctggggtttgggttgttctcttc 100  Q
    |||||| |||||||||||||||||||||| ||||||| |||||||||| ||||||  | ||||||||||||||||||| ||||||    |||||||||||    
T  1130085 ccaccgatgagaatatttcttcaaaatcattgcctttattttgatggcgccccttagcgacaattcgtgctttgtacccggggttcaacttgttctcttc 1130184  T
Q  101 agacttgagtttgaacacccatttatttttcaatg 135  Q
    ||||||||||||||||| ||| |||||||||||||    
T  1130185 agacttgagtttgaacatccaattatttttcaatg 1130219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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