View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21581_high_22 (Length: 318)

Name: NF21581_high_22
Description: NF21581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21581_high_22
NF21581_high_22
[»] chr7 (1 HSPs)
chr7 (36-318)||(48496345-48496627)


Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 36 - 318
Target Start/End: Complemental strand, 48496627 - 48496345
Alignment:
Q  36 gtgcttaatcaagttgtttatccaaacatgatctcaatgtataaggtatgttgtttgattgtatgatagttgaagatatgtaggtgaaagagatggctgc 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48496627 gtgcttaatcaagttgtttatccaaacatgatctcaatgtataaggtatgttgtttgattgtatgatagttgaagatatgtaggtgaaagagatggctgc 48496528  T
Q  136 atattttgagacnnnnnnngttagctagctcatctaattttttgctcttagcagtgtaataatgttggcagtttgagagtgcaagagttgggaagtaatg 235  Q
    ||||||||||||       ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48496527 atattttgagacaaaaaaagttagctagctcatctaattttttgctgttagcagtgtaataatgttggcagtttgagagtgcaagagttgggaagtaatg 48496428  T
Q  236 aatttgtatcagcattagcagcaggaatgaaagcaaaacttatagtggaagtaacatcatctcctgcgtcttcatcaacgatt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  48496427 aatttgtatcagcattagcagcaggaatgaaagcaaaacttatagtggaagtaacatcatctcctgcatcttcatcaacgatt 48496345  T

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