View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21581_high_23 (Length: 316)
Name: NF21581_high_23
Description: NF21581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21581_high_23 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 131; Significance: 6e-68; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 95 - 268
Target Start/End: Original strand, 2979203 - 2979373
Alignment:
| Q |
95 |
accataaaccaatctttctttaaaacaagtaatgggtatatatgtaattttcannnnnnnaaatcaaatatttaattcatcccaaacttttttaataaca |
194 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
2979203 |
accataaaccaatctttctttaaaacaactaatgggtatatatgtaattttcatttttttaaatcaaatatttaattcatcccaaacttgtttaataaca |
2979302 |
T |
|
| Q |
195 |
ccggaaaagtaggaagcttcgtcgcttccttcatatatttgtttcaacgtcacacatcacgtaaatatgcttag |
268 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2979303 |
ccggaaaagtaggaagc---gtcgcttccttcatatatttgtttcaacgtcacacatcacgtaaatatgcttag |
2979373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 38 - 76
Target Start/End: Original strand, 2979156 - 2979194
Alignment:
| Q |
38 |
tgaaagagtaaatcatcgacctaaacctacacctattag |
76 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2979156 |
tgaaagagtaaatcatcgacctaaacctacacctattag |
2979194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University