View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21581_high_24 (Length: 315)

Name: NF21581_high_24
Description: NF21581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21581_high_24
NF21581_high_24
[»] chr3 (2 HSPs)
chr3 (1-307)||(5382661-5382967)
chr3 (69-307)||(13722434-13722671)
[»] chr1 (8 HSPs)
chr1 (1-307)||(42375801-42376107)
chr1 (93-307)||(23200945-23201159)
chr1 (109-307)||(14476202-14476401)
chr1 (211-307)||(2796448-2796544)
chr1 (1-121)||(23200823-23200943)
chr1 (1-120)||(14476419-14476538)
chr1 (2-52)||(2796598-2796648)
chr1 (69-131)||(2796537-2796599)
[»] scaffold0015 (1 HSPs)
scaffold0015 (1-307)||(28859-29157)
[»] chr8 (2 HSPs)
chr8 (1-307)||(86932-87230)
chr8 (267-307)||(19803151-19803191)
[»] chr6 (2 HSPs)
chr6 (93-307)||(16777097-16777310)
chr6 (1-121)||(16777312-16777432)
[»] chr7 (4 HSPs)
chr7 (91-307)||(11711870-11712084)
chr7 (2-120)||(11711751-11711869)
chr7 (93-297)||(13161142-13161344)
chr7 (3-120)||(13161023-13161140)
[»] chr4 (2 HSPs)
chr4 (76-192)||(14024112-14024229)
chr4 (2-52)||(14024064-14024114)


Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 5382967 - 5382661
Alignment:
Q  1 actgacctgtccagtcatcgacaagtcagcctccacacccctgccacgtgtcccctagtgccacgtcatcacccagtcaaccaaaatatccagaaattac 100  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| | ||||||||||    
T  5382967 actgacctgtccaatcatcgacaagtcagcctccacacccctgccacgtgtcacctagtgccacgtcatcacccagtcatccaaaattttcagaaattac 5382868  T
Q  101 aaatttgccccaaaactttttgaatttagaaaattgcccctcaactttcaaaaattgcataattacccctgtactttttgaaattgtaaatttgccccta 200  Q
    |||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||    
T  5382867 aaattttccccaaaactttctgaaattagaaaattgcccctcaactttcaaaaattgcagaattatccctgtactttttgaaattgcaaatttgccccta 5382768  T
Q  201 ttctttctggaattacaattttacccttgttcaaaaattgtgaattttcaggaaatccttcctttttagtgctattatagtagacaattcctattatgct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  5382767 ttctttctggaattacaattttacccttgttcaaaaattgtgaattttcaggaaatccttcctttttagtgctattacaatagacaattcctattatgct 5382668  T
Q  301 ctgtggt 307  Q
    |||||||    
T  5382667 ctgtggt 5382661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 69 - 307
Target Start/End: Complemental strand, 13722671 - 13722434
Alignment:
Q  69 tcacccagtcaaccaaaatatccagaaattacaaatttgccccaaaactttttgaatttagaaaattgcccctcaactttcaaaaattgcataattaccc 168  Q
    ||||||||||| ||||||| | ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  13722671 tcacccagtcacccaaaattttcagaaattacaaatttgccccaaaactttctgaaattagaaaattgcccctcaactttcaaaaattgcataattaccc 13722572  T
Q  169 ctgtactttttgaaattgtaaatttgcccctattctttctggaattacaattttacccttgttcaaaaattgtgaattttcaggaaatccttccttttta 268  Q
     ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13722571 ttgtactttttgaaattgcaaatttgccc-tattctttctggaattacaattttacccttgttcaaaaattgtgaattttcaggaaatccttccttttta 13722473  T
Q  269 gtgctattatagtagacaattcctattatgctctgtggt 307  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  13722472 gtgctattataatagacaattcctattatgctctgtggt 13722434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 42375801 - 42376107
Alignment:
Q  1 actgacctgtccagtcatcgacaagtcagcctccacacccctgccacgtgtcccctagtgccacgtcatcacccagtcaaccaaaatatccagaaattac 100  Q
    |||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| || | ||||||| | || |||||||    
T  42375801 actgacctgttcagtcatcgacaagtcagcctccacatccctgccacgtgtcacctagtgccacgtcatcacccggttacccaaaattttcaaaaattac 42375900  T
Q  101 aaatttgccccaaaactttttgaatttagaaaattgcccctcaactttcaaaaattgcataattacccctgtactttttgaaattgtaaatttgccccta 200  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  42375901 aaatttgccccaaaactttctgaaattagaaaattgcccctcaactttcaaaaattgcataattacccctgtactttttgaaattgcaaatttgccccta 42376000  T
Q  201 ttctttctggaattacaattttacccttgttcaaaaattgtgaattttcaggaaatccttcctttttagtgctattatagtagacaattcctattatgct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  42376001 ttctttctggaattacaattttacccttgttcaaaaattgtgaattttcaggaaatccttcctttttagtgctattataatagacaattcctattatgct 42376100  T
Q  301 ctgtggt 307  Q
     ||||||    
T  42376101 ttgtggt 42376107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 93 - 307
Target Start/End: Original strand, 23200945 - 23201159
Alignment:
Q  93 gaaattacaaatttgccccaaaactttttgaatttagaaaattgcccctcaactttcaaaaattgcataattacccctgtactttttgaaattgtaaatt 192  Q
    |||||| || ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  23200945 gaaatttcagatttgccccaaaactttctgaaattagaaaattgcccctcaactttcaaaaattgcagaattacccctgtactttttgaaattgcaaatt 23201044  T
Q  193 tgcccctattctttctggaattacaattttacccttgttcaaaaattgtgaattttcaggaaatccttcctttttagtgctattatagtagacaattcct 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||    
T  23201045 tgcccctattctttctggaattacaattttacccttgttcaaaaattgtgaattttcaggaaatctttcctttttagtgttattataatagacaattcct 23201144  T
Q  293 attatgctctgtggt 307  Q
    |||||||| ||||||    
T  23201145 attatgctatgtggt 23201159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 109 - 307
Target Start/End: Complemental strand, 14476401 - 14476202
Alignment:
Q  109 cccaaaactttttgaatttagaaaattgcccctcaactttcaaaaattgcataat-tacccctgtactttttgaaattgtaaatttgcccctattctttc 207  Q
    ||||||||||| |||| |||||||||||||||| ||||||||||||||||  ||  ||||||||||||||||||||||| |||||| |||||||||||||    
T  14476401 cccaaaactttctgaaattagaaaattgcccctaaactttcaaaaattgcggaaaatacccctgtactttttgaaattgcaaattttcccctattctttc 14476302  T
Q  208 tggaattacaattttacccttgttcaaaaattgtgaattttcaggaaatccttcctttttagtgctattatagtagacaattcctattatgctctgtggt 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||    
T  14476301 tggaattacaattttacccttgttcaaaaattgtgaattttcaggaaatccttcctttttagtgctatcataatagacaattcctattatgctctatggt 14476202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 211 - 307
Target Start/End: Complemental strand, 2796544 - 2796448
Alignment:
Q  211 aattacaattttacccttgttcaaaaattgtgaattttcaggaaatccttcctttttagtgctattatagtagacaattcctattatgctctgtggt 307  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2796544 aattagaattttacccttgttcaaaaattgtgaattttcaggaaatccttcctttttagtgctattataatagacaattcctattatgctctgtggt 2796448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 23200823 - 23200943
Alignment:
Q  1 actgacctgtccagtcatcgacaagtcagcctccacacccctgccacgtgtcccctagtgccacgtcatcacccagtcaaccaaaatatccagaaattac 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||| ||||||||| ||||||||| ||||||| | ||||||||||    
T  23200823 actgacctgtccagtcatcgacaagtcagcctccacatccctgccacatgtcacctagttccacgtcataacccagtcacccaaaattttcagaaattac 23200922  T
Q  101 aaatttgccccaaaacttttt 121  Q
    |||||||||||| ||| ||||    
T  23200923 aaatttgccccacaacatttt 23200943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 14476538 - 14476419
Alignment:
Q  1 actgacctgtccagtcatcgacaagtcagcctccacacccctgccacgtgtcccctagtgccacgtcatcacccagtcaaccaaaatatccagaaattac 100  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||||| |  ||||||||||||||||||||||| |||| || | |||||||| |    
T  14476538 actgacctgtccagtcatcgacaagtcagcccccacatccctgccacgtgtcactcagtgccacgtcatcacccagtcacccaacattttcagaaattgc 14476439  T
Q  101 aaatttgccccaaaactttt 120  Q
    ||||||||||||||||||||    
T  14476438 aaatttgccccaaaactttt 14476419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 2796648 - 2796598
Alignment:
Q  2 ctgacctgtccagtcatcgacaagtcagcctccacacccctgccacgtgtc 52  Q
    |||||||||| ||| ||||||||||||||||||||| ||||||||||||||    
T  2796648 ctgacctgtctagtaatcgacaagtcagcctccacatccctgccacgtgtc 2796598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 131
Target Start/End: Complemental strand, 2796599 - 2796537
Alignment:
Q  69 tcacccagtcaaccaaaatatccagaaattacaaatttgccccaaaactttttgaatttagaa 131  Q
    ||||||||||| ||||||| | || |||||||||||||| ||||||||||| |||| ||||||    
T  2796599 tcacccagtcatccaaaattttcataaattacaaatttggcccaaaactttatgaaattagaa 2796537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 29157 - 28859
Alignment:
Q  1 actgacctgtccagtcatcgacaagtcagcctccacacccctgccacgtgtcccctagtgccacgtcatcacccagtcaaccaaaatatccagaaattac 100  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||        |||| ||||||||||||    
T  29157 actgacatgtccagtcatcgacacgtcagcctccacacccctgccacgtgtcacctagtgccacgtcatcaccca--------aaatttccagaaattac 29066  T
Q  101 aaatttgccccaaaactttttgaatttagaaaattgcccctcaactttcaaaaattgcataattacccctgtactttttgaaattgtaaatttgccccta 200  Q
    |||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  29065 aaatttaccccaaacctttttgaaattagaaaattgcccctcaactttcaaaaattgcagaattacccctgtactttttgaaattgcaaatttgccccta 28966  T
Q  201 ttctttctggaattacaattttacccttgttcaaaaattgtgaattttcaggaaatccttcctttttagtgctattatagtagacaattcctattatgct 300  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  28965 ttctttctgaaattacaattttacccttgttcaaaaattgtgaattttcaggaaatccttcctttttagtactattataatagacaattcctattatgct 28866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 86932 - 87230
Alignment:
Q  1 actgacctgtccagtcatcgacaagtcagcctccacacccctgccacgtgtcccctagtgccacgtcatcacccagtcaaccaaaatatccagaaattac 100  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||        |||| ||||||||||||    
T  86932 actgacatgtccagtcatcgacacgtcagcctccacacccctgccacgtgtcacctagtgccacgtcatcaccca--------aaatttccagaaattac 87023  T
Q  101 aaatttgccccaaaactttttgaatttagaaaattgcccctcaactttcaaaaattgcataattacccctgtactttttgaaattgtaaatttgccccta 200  Q
    |||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  87024 aaatttaccccaaacctttttgaaattagaaaattgcccctcaactttcaaaaattgcagaattacccctgtactttttgaaattgcaaatttgccccta 87123  T
Q  201 ttctttctggaattacaattttacccttgttcaaaaattgtgaattttcaggaaatccttcctttttagtgctattatagtagacaattcctattatgct 300  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  87124 ttctttctgaaattacaattttacccttgttcaaaaattgtgaattttcaggaaatccttcctttttagtactattataatagacaattcctattatgct 87223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 267 - 307
Target Start/End: Original strand, 19803151 - 19803191
Alignment:
Q  267 tagtgctattatagtagacaattcctattatgctctgtggt 307  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  19803151 tagtgctattataatagacaattcctattatgctctgtggt 19803191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 151; Significance: 7e-80; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 93 - 307
Target Start/End: Complemental strand, 16777310 - 16777097
Alignment:
Q  93 gaaattacaaatttgccccaaaactttttgaatttagaaaattgcccctcaactttcaaaaattgcataattacccctgtactttttgaaattgtaaatt 192  Q
    |||||| || |||||||||||||| || |||| |||||||||||||||||||||||||||||||||  |||||||| | ||||||||||||||| |||||    
T  16777310 gaaatttcagatttgccccaaaacattatgaaattagaaaattgcccctcaactttcaaaaattgcggaattaccc-tatactttttgaaattgcaaatt 16777212  T
Q  193 tgcccctattctttctggaattacaattttacccttgttcaaaaattgtgaattttcaggaaatccttcctttttagtgctattatagtagacaattcct 292  Q
    | ||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  16777211 ttcccctattctttctggatttacaatttttcccttgttcgaaaattgtgaattttcaggaaatccttcctttttagtgctattataatagacaattcct 16777112  T
Q  293 attatgctctgtggt 307  Q
    |||||||||||||||    
T  16777111 attatgctctgtggt 16777097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 16777432 - 16777312
Alignment:
Q  1 actgacctgtccagtcatcgacaagtcagcctccacacccctgccacgtgtcccctagtgccacgtcatcacccagtcaaccaaaatatccagaaattac 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||| |  |||||||| |||||||||||||| | ||||| | ||||||| ||    
T  16777432 actgacctgtccagtcatcgacaagtcagcctccacatccctgccacgtgtcactcagtgccacatcatcacccagtcacctaaaattttcagaaataac 16777333  T
Q  101 aaatttgccccaaaacttttt 121  Q
    |||| ||||||| ||||||||    
T  16777332 aaatctgccccataacttttt 16777312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 144; Significance: 1e-75; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 91 - 307
Target Start/End: Original strand, 11711870 - 11712084
Alignment:
Q  91 cagaaattacaaatttgccccaaaactttttgaatttagaaaattgcccctcaactttcaaaaa-ttgcataattacccctgtactttttgaaattgtaa 189  Q
    |||||||| || ||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||| |||||||| | |   |||| |||||| ||    
T  11711870 cagaaatttcatatttgccccaaaactttctgaaattagaaaattgcccctcaactttcaaaaaattgcagaattaccctttt---tttttaaattgcaa 11711966  T
Q  190 atttgcccctattctttctggaattacaattttacccttgttcaaaaattgtgaattttcaggaaatccttcctttttagtgctattatagtagacaatt 289  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  11711967 atttgcccatattctttatggaattacaattttacccttgttcaaaaattgtgaattttcaggaaatccttcctttttagtgctattataatagacaatt 11712066  T
Q  290 cctattatgctctgtggt 307  Q
     |||||||||||||||||    
T  11712067 tctattatgctctgtggt 11712084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 2 - 120
Target Start/End: Original strand, 11711751 - 11711869
Alignment:
Q  2 ctgacctgtccagtcatcgacaagtcagcctccacacccctgccacgtgtcccctagtgccacgtcatcacccagtcaaccaaaatatccagaaattaca 101  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||| ||||||||| ||||||| |||||||||| ||    
T  11711751 ctgacatgtccagtcatcgacaagtcagcctccacatccctgccacgtgtcacccagtgccacgtcatgacccagtcacccaaaatttccagaaattgca 11711850  T
Q  102 aatttgccccaaaactttt 120  Q
    ||||| |||||||||||||    
T  11711851 aattttccccaaaactttt 11711869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 93 - 297
Target Start/End: Original strand, 13161142 - 13161344
Alignment:
Q  93 gaaattacaaatttgccccaaaactttttgaatttagaaaattgcccctcaactttcaaaaattgcataattacccctgtactttttgaaattgtaaatt 192  Q
    ||||||||| |||||||| ||||||||||||| ||| ||| |||||||||| ||||||||| ||||| | |||||||| || |||||||||||| |||||    
T  13161142 gaaattacatatttgccc-aaaactttttgaaattacaaagttgcccctcagctttcaaaatttgcagatttacccctatattttttgaaattgcaaatt 13161240  T
Q  193 tgcccctattctttctggaattacaattt-tacccttgttcaaaaattgtgaattttcaggaaatccttcctttttagtgctattatagtagacaattcc 291  Q
    | ||| | ||||||||  ||||||| ||| |||||  |||  |||||||||| |||||| |||||| || | |||||||||||||||  |||| ||||||    
T  13161241 ttcccatgttctttctaaaattacattttataccccggtt-gaaaattgtgatttttcaagaaatcatttc-ttttagtgctattatcatagaaaattcc 13161338  T
Q  292 tattat 297  Q
    ||||||    
T  13161339 tattat 13161344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 120
Target Start/End: Original strand, 13161023 - 13161140
Alignment:
Q  3 tgacctgtccagtcatcgacaagtcagcctccacacccctgccacgtgtc-ccctagtgccacgtcatcacccagtcaaccaaaatatccagaaattaca 101  Q
    ||||| ||||||||||||||||||||||| ||||| ||  ||||| |||| ||| |||||| | |||||| |||||||   ||| | | || ||||||||    
T  13161023 tgaccagtccagtcatcgacaagtcagccaccacagccgcgccacatgtcacccaagtgcctcatcatcaaccagtcacttaaactct-caaaaattaca 13161121  T
Q  102 aatttgccccaaaactttt 120  Q
    ||| |||||||||||||||    
T  13161122 aatctgccccaaaactttt 13161140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 76 - 192
Target Start/End: Original strand, 14024112 - 14024229
Alignment:
Q  76 gtcaaccaaaatatccagaaattacaaatttgccccaaaacttttt-gaatttagaaaattgcccctcaactttcaaaaattgcataattacccctgtac 174  Q
    |||| ||||||| ||||||||||||||||||||||||| ||||||| ||| ||  | | || ||||||||||||||||||||||| |||| |||||||||    
T  14024112 gtcacccaaaatttccagaaattacaaatttgccccaatactttttcgaaatttcagattttcccctcaactttcaaaaattgcagaattgcccctgtac 14024211  T
Q  175 tttttgaaattgtaaatt 192  Q
    |||||||||||| |||||    
T  14024212 tttttgaaattgcaaatt 14024229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 14024064 - 14024114
Alignment:
Q  2 ctgacctgtccagtcatcgacaagtcagcctccacacccctgccacgtgtc 52  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  14024064 ctgatctgtccagtcatcgacaagtcagcctccacatccctgccacgtgtc 14024114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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