View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21581_high_26 (Length: 314)
Name: NF21581_high_26
Description: NF21581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21581_high_26 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 44038335 - 44038026
Alignment:
| Q |
1 |
aaacaatgttgagacctgtatcccaaatggcaagcttcaactttttaccctctatagtgacgtatttgaccttaaaatcaacacctacacaatgcaatgg |
100 |
Q |
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| T |
44038335 |
aaacaatgttgagacctgtatcccaaatggcaagcttcaactttttaccgtctatagtgaagtatttgaccttaaaatcaacacctacacaatgcaatgg |
44038236 |
T |
|
| Q |
101 |
ttatgaatgataccatgacatgaagaatgaaatgaataaggaaaaaagtgagtgactcaccgattgtgggagatagattttcgaaaggatcagaggtgaa |
200 |
Q |
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| T |
44038235 |
ttatgaatgataccatgacatgaagaatgaaatgaataaggaaaaaagtgagtgactcaccgattgtgggagatagattttcgaaagaatcagaagtgaa |
44038136 |
T |
|
| Q |
201 |
acagaggaggagactactcttgccaacaccggagtctccaatcatcaaaagtttgaacacataatcgaattcctgaggcgtactcgaatccatcgcaatt |
300 |
Q |
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| T |
44038135 |
acagaggaggagactactcttgccaacaccggagtctccaatcatcaacagtttgaacacataatcgaattcctgaggcgtactcgaatccatcgcaatt |
44038036 |
T |
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| Q |
301 |
aactaattcc |
310 |
Q |
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| T |
44038035 |
aactaattcc |
44038026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 39223819 - 39223751
Alignment:
| Q |
18 |
gtatcccaaatggcaagcttcaactttttaccctctatagtgacgtatttgaccttaaaatcaacacct |
86 |
Q |
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| T |
39223819 |
gtatcccaaatggcaagcttaagctttttaccctctatcgtgacatatttgaccttaaaatcaacacct |
39223751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 272
Target Start/End: Complemental strand, 39223654 - 39223571
Alignment:
| Q |
189 |
atcagaggtgaaacagaggaggagactactcttgccaacaccggagtctccaatcatcaaaagtttgaacacataatcgaattc |
272 |
Q |
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|||||||||||| | ||| || |||||||| ||||||||||| || || |||||||| || | |||||||| |||||||||||| |
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| T |
39223654 |
atcagaggtgaatctgagaagaagactacttttgccaacaccagaatccccaatcattaacaatttgaacatataatcgaattc |
39223571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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