View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21581_high_4 (Length: 420)
Name: NF21581_high_4
Description: NF21581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21581_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 17 - 377
Target Start/End: Complemental strand, 32217392 - 32217032
Alignment:
| Q |
17 |
acctgtgtataaatacctgaaatcacaaaaatgtggaagtttgggatcaagaaggatcaagtggaattttacaaagtttttagttgatgaggaaggccgt |
116 |
Q |
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| T |
32217392 |
acctgtgtataaatacctgaaatcacaaaaatgtggaagtttgggatcaagaaggatcaagtggaattttacaaagtttttagttgatgaggaaggccgt |
32217293 |
T |
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| Q |
117 |
gtcatccaacgttatagtccaaccactcaaccattagccattgaagtactttttctttctctctctgaaattgctttgtatacatatttctttatctatg |
216 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32217292 |
gtcatccaacgttatagtccaaccacccaaccattagccattgaagtactttttctttctctctctgaaattgctttgtatacatatttcattatctatg |
32217193 |
T |
|
| Q |
217 |
catatttatatatctttgagaggttaaattaatttgcattttcacatatctttgacagaatgatatcaagaaagcactgagagtggctaattgagagact |
316 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32217192 |
catatttatatatctttgagaggttaaattattttgcattttcacatatctttgacagaatgatatcaagaaagcactgagagtggctaattgagagact |
32217093 |
T |
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| Q |
317 |
ctacaactatttcagttcaggccattgctggtgtgctgaagatatatcttataatacctcc |
377 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32217092 |
ctacaactatttcagttcaggccattgctggtgtgctgaagatatatcttataatacctcc |
32217032 |
T |
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