View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21581_high_9 (Length: 363)
Name: NF21581_high_9
Description: NF21581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21581_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 15 - 253
Target Start/End: Original strand, 4264004 - 4264242
Alignment:
| Q |
15 |
gaaatgaaatgaacctggacaaaagagaagtttccaatacgaataacccttccattagcaactgccatggagtttgcaaatgggagagactcgtcacttg |
114 |
Q |
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| T |
4264004 |
gaaatgaaatgaacctggacaaaagagaagtttccaatacgaataacccttccattagcaactgccatggagtttgcaaatgggagagactcatcacttg |
4264103 |
T |
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| Q |
115 |
tgtatataaccccattttttataatgaaatcagctactaatggaagagtagactgtggaagcttcttccatgaaggaaaatctgcaaaacccagaaatgg |
214 |
Q |
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| T |
4264104 |
tgtatataaccccattttttataatgaaatcagatactaatggaagagtagactgtggaagcttcttccataaaggaaaatctgcaaaacccagaaatgg |
4264203 |
T |
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| Q |
215 |
tttatgaattcattcatttgtgcatgcaaaagtgtacac |
253 |
Q |
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| T |
4264204 |
cttatgaattcattcatttgtgcatgcaaaagtgtacac |
4264242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 288 - 362
Target Start/End: Original strand, 4264275 - 4264349
Alignment:
| Q |
288 |
tacatgtggggtggagaagatggagagaagcaatgagtatggctagaagtagagagattgaagcggagataacta |
362 |
Q |
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| T |
4264275 |
tacatgtggggtggagaagatggagagaagcaatgagtatggctagaagtagagagattgaagcggagataacta |
4264349 |
T |
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