View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21582_high_13 (Length: 349)
Name: NF21582_high_13
Description: NF21582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21582_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 7 - 182
Target Start/End: Original strand, 7423451 - 7423626
Alignment:
| Q |
7 |
atcccgagctggtttgtgttgctgccggcaattacttggccgagatacggctctgtctcgatccatcaacagcaacaacgtacatggtatgtcctacgtc |
106 |
Q |
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| T |
7423451 |
atcccgagctggtttgtgttgccgccggcaattacttggccgagatacggctctgtctcgatccatcaacagcaacaacgtacatggtatgtcctacgtc |
7423550 |
T |
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| Q |
107 |
aattaacaagaagccaagttgtcaaccgatggtagcttttgcggcctaatacacaggtgacggttatggttggtgg |
182 |
Q |
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| T |
7423551 |
aattaacaagaagccaagttgtcaaccgatggtagcttttgcggcctaatacacaggtgacggttatggttggtgg |
7423626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 330
Target Start/End: Original strand, 25901680 - 25901717
Alignment:
| Q |
293 |
attcacaatctacctctgtttgcttcaacttagtcctt |
330 |
Q |
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| T |
25901680 |
attcacaatccacttctgtttgcttcaacttagtcctt |
25901717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 151; Significance: 8e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 175 - 329
Target Start/End: Complemental strand, 4059255 - 4059101
Alignment:
| Q |
175 |
gttggtggtgtcattcgcatgtagaattgtggggaaagtttcaatgctcttaactcttgcacttctttttgcaaccgtctattttcatccgttagattct |
274 |
Q |
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| T |
4059255 |
gttggtggtgtcatttgcatgtagaattgtggggaaagtttcaatgctcttaactcttgcacttctttttgcaaccgtctattttcatccgttagattct |
4059156 |
T |
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| Q |
275 |
cacaacatcttttcaaaaattcacaatctacctctgtttgcttcaacttagtcct |
329 |
Q |
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| T |
4059155 |
cacaacatcttttcaaaaattcacaatctacctctgtttgcttcaacttagtcct |
4059101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 175 - 329
Target Start/End: Original strand, 41451950 - 41452104
Alignment:
| Q |
175 |
gttggtggtgtcattcgcatgtagaattgtggggaaagtttcaatgctcttaactcttgcacttctttttgcaaccgtctattttcatccgttagattct |
274 |
Q |
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||||||||||||||| ||||||| ||||||||||||||||||| |||||| | |||||| ||||| || || | | ||||| || ||||||||||| | |
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| T |
41451950 |
gttggtggtgtcatttgcatgtaaaattgtggggaaagtttcagtgctctaagctcttgtacttccttctgtagtctcctattctcctccgttagatttt |
41452049 |
T |
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| Q |
275 |
cacaacatcttttcaaaaattcacaatctacctctgtttgcttcaacttagtcct |
329 |
Q |
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| T |
41452050 |
cacagcaccttttcaacacttcacaatcaacctctgtttgcttcagctttgtcct |
41452104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 185 - 329
Target Start/End: Complemental strand, 891264 - 891120
Alignment:
| Q |
185 |
tcattcgcatgtagaattgtggggaaagtttcaatgctcttaactcttgcacttctttttgcaaccgtctattttcatccgttagattctcacaacatct |
284 |
Q |
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| T |
891264 |
tcatttgcatgtagagttgtggagataacttcaatgccctaagctcttgcacttccttttgcaacctcctattctcatcagttagagtctcacagcatct |
891165 |
T |
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| Q |
285 |
tttcaaaaattcacaatctacctctgtttgcttcaacttagtcct |
329 |
Q |
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| T |
891164 |
cttcaagtactcacaatccacttcagtttgcttcaacttggtcct |
891120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 329
Target Start/End: Complemental strand, 23336680 - 23336623
Alignment:
| Q |
272 |
tctcacaacatcttttcaaaaattcacaatctacctctgtttgcttcaacttagtcct |
329 |
Q |
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| T |
23336680 |
tctcacaacatctcttcaaatactcacaatccacttctgtttgctttaactttgtcct |
23336623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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