View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21582_high_4 (Length: 462)
Name: NF21582_high_4
Description: NF21582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21582_high_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 389; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 21 - 444
Target Start/End: Original strand, 2227749 - 2228181
Alignment:
| Q |
21 |
cacagacaccagaaaaactcagttaaatttcttaatctatcaaacacgtggatttaaacatttcagttaaatttttaaaaac---------tatgtgctt |
111 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2227749 |
cacagacactagaaaaactcagttaaatttcttaatctatcaaacacgtggatttaaacatttcagttaaatttttaaaaactatgtaaactatgtgctt |
2227848 |
T |
|
| Q |
112 |
gatttgatgttgctgcatgcaatgaatgagaaatttaactgaatttttcacattgattagggagtggattcgtgattaaaactatgtgcttgatttgatg |
211 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2227849 |
gatttgatgttgctgcgtgcaatgaatgagaaatttaactgaatttttcacattgattagggagtggattcgtgattaaaactatgtgcttgatttgatg |
2227948 |
T |
|
| Q |
212 |
atgttgctgcgtgcaatgaatgagaaatttttcacattgctctcaggtttgtgattccgcatgaaatcaatcacatgtttcaaaaaatcacacaactatg |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2227949 |
atgttgctgcgtgcaatgaatgagaaatttttcacattgctctcaggtttgtgattccgcatgaaatcaatcacatgtttcaaaaaatcacacaactatg |
2228048 |
T |
|
| Q |
312 |
agcaagatcacaaatctactctctaattaatgtaaaaaattcagttcaatttcttattcttaggctacatcaaacatgtggatttcaaacaatcacaaaa |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2228049 |
agcaagatcacaaatctactctctaattaatgtaaaaaattcagttcaatttcttattcttatgctacatcaaacatgtggatttcaaacaatcacaaaa |
2228148 |
T |
|
| Q |
412 |
ctgaaaacataagtcacaaatctactccctaat |
444 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
2228149 |
ctgaaaacataagtcacaaatctactccctaat |
2228181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 187
Target Start/End: Complemental strand, 2228375 - 2228277
Alignment:
| Q |
90 |
aatttttaaaaactatgtgcttgatttgatgttgctgcatgcaatgaatgagaaatttaactga-atttttcacattgattagggagtggattcgtgat |
187 |
Q |
| |
|
||||||| |||||| ||| |||||||||||||||||| || | ||||||||| ||||||||| ||||| || ||||||||| ||| |||||||||| |
|
|
| T |
2228375 |
aatttttgaaaactgtgtatttgatttgatgttgctgcgtgtgaagaatgagaagtttaactgatttttttgacgttgattaggtagttgattcgtgat |
2228277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 187
Target Start/End: Complemental strand, 2228446 - 2228394
Alignment:
| Q |
135 |
gaatgagaaatttaactgaatttttcacattgattagggagtggattcgtgat |
187 |
Q |
| |
|
|||||||| ||||| || |||| |||||||||||||||||||| ||||||||| |
|
|
| T |
2228446 |
gaatgagagatttagcttaattgttcacattgattagggagtgtattcgtgat |
2228394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University