View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21582_high_9 (Length: 416)
Name: NF21582_high_9
Description: NF21582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21582_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 42 - 402
Target Start/End: Original strand, 3744217 - 3744572
Alignment:
| Q |
42 |
atcccgaatgatgtgtcactgtttctat--ctatgccatatgctttctcttgtgcaaagcttagtcttcaaactcagtaaaattttgaaatatatataat |
139 |
Q |
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| T |
3744217 |
atcccaaatgatgtatcactgttcctatatctatgccatgtgctttctcttgtgtaaagcttagtcttcaaactcagtaaaattttgaaatatctataat |
3744316 |
T |
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| Q |
140 |
tttataaatttatttgatagtcctgagatggttgaacaatgaattatcaatcatcaattatgctagcccaaagctcgttccgtagaaggatttatcgcgt |
239 |
Q |
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| T |
3744317 |
ttcataaatttatttgatagtcctgagatggttgaacaatgaattatcaatcatcaattatgctagctcaaagctcgttccgtagaaggatttatcgcgt |
3744416 |
T |
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| Q |
240 |
caaaagtagcaagacatagtgaataaaatatccaacttaaaacaagaaaacatatgctaaatttaatcaaatacatcatatttccctctcttaatccaca |
339 |
Q |
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| T |
3744417 |
cataagtagcaagacatagcgaataaaatatccaacttaaaacaagaaaacatatgctaaatttaatcaaatacatcatatttctctctcttaatccaca |
3744516 |
T |
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| Q |
340 |
attactaattcaaaatcaagaacaaagaacaagaacaatcacaatcacagaaacagaataact |
402 |
Q |
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| T |
3744517 |
attactaattcaaaatc-------aagaacaagaacaatcaaaatcacagaaacagaataact |
3744572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 3744203 - 3744103
Alignment:
| Q |
1 |
acgtttttgctatgtttcaataatgctaaacatagcgttttatcccgaatgatgtgtcactgtttctatctatgccatatgctttctcttgtgcaaagct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3744203 |
acgtttttgctatgtttcaataatgctaaacatagcgttttatcccgaatgatgtgtcactgtttcaatctatgccatatgctttctcttgtgcaaagct |
3744104 |
T |
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| Q |
101 |
t |
101 |
Q |
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| T |
3744103 |
t |
3744103 |
T |
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