View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21582_low_12 (Length: 376)

Name: NF21582_low_12
Description: NF21582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21582_low_12
NF21582_low_12
[»] chr2 (3 HSPs)
chr2 (1-317)||(13448237-13448553)
chr2 (1-317)||(13454708-13455024)
chr2 (1-317)||(13440074-13440390)
[»] chr5 (2 HSPs)
chr5 (1-311)||(12540559-12540869)
chr5 (1-308)||(28385208-28385515)
[»] chr7 (1 HSPs)
chr7 (1-317)||(3417516-3417832)
[»] chr4 (5 HSPs)
chr4 (1-317)||(48965203-48965519)
chr4 (57-317)||(48958074-48958337)
chr4 (57-317)||(48961221-48961486)
chr4 (112-317)||(48912331-48912539)
chr4 (112-271)||(48974103-48974262)
[»] scaffold0536 (3 HSPs)
scaffold0536 (115-317)||(6497-6702)
scaffold0536 (112-282)||(10517-10687)
scaffold0536 (121-179)||(1580-1638)
[»] chr8 (1 HSPs)
chr8 (103-281)||(12641506-12641684)
[»] chr6 (2 HSPs)
chr6 (142-282)||(12590196-12590336)
chr6 (57-281)||(12483492-12483716)


Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 13448237 - 13448553
Alignment:
Q  1 gccttctctatgctatctctgctcactaacttctttctctccgcaacaccactcgtacaccattctgttgcaccgacttcaactccaattcctcggaatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13448237 gccttctctatgctatctctgctcactaacttctttctctccgcgacaccactcgtacaccattctgttgcaccgacttcaactccaattcctcggaatt 13448336  T
Q  101 gtgttataagtttctcattgtagaattgatctccatgaaccggccatgttatcattggaactcccgcactaacagcctctacggttgagttccccccgca 200  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13448337 gtgttatcagtttctcattgtagaattgatctccatgaaccggccacgttatcattggaactcccgcactaacagcctctacggttgagttccccccgca 13448436  T
Q  201 atgcgtcataaatccccccactgcagggtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacccttcttcccgatatttctctcttca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13448437 atgcgtcataaatccccccactgcagggtggctcaatatcttaacctgtggggcccaacccctaatgatcaaacccttcttcccgatatttctctcttca 13448536  T
Q  301 aatcccttcggtaacca 317  Q
    |||||||||||||||||    
T  13448537 aatcccttcggtaacca 13448553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 13454708 - 13455024
Alignment:
Q  1 gccttctctatgctatctctgctcactaacttctttctctccgcaacaccactcgtacaccattctgttgcaccgacttcaactccaattcctcggaatt 100  Q
    |||||||||||||||||| ||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| | ||    
T  13454708 gccttctctatgctatctttgctcaccaacttctctctctccgcaacaccacttgtacaccattctgttgcaccgacttcaattccaattcctcgaactt 13454807  T
Q  101 gtgttataagtttctcattgtagaattgatctccatgaaccggccatgttatcattggaactcccgcactaacagcctctacggttgagttccccccgca 200  Q
    ||||||| |||||||| |||||||||||||||||||| || ||||| ||||||||||||||||||   ||||||||||||||| ||||||||||||||||    
T  13454808 gtgttattagtttctcgttgtagaattgatctccatggactggccacgttatcattggaactcccatgctaacagcctctacgattgagttccccccgca 13454907  T
Q  201 atgcgtcataaatccccccactgcagggtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacccttcttcccgatatttctctcttca 300  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||| ||||||||    
T  13454908 atgcgtcataaatccccccactgcagggtgactcaatatcttaacttgtggggcccaacccctaatgatcaaaccctttttctcgatgtttttctcttca 13455007  T
Q  301 aatcccttcggtaacca 317  Q
    ||||||||||| |||||    
T  13455008 aatcccttcggcaacca 13455024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 13440074 - 13440390
Alignment:
Q  1 gccttctctatgctatctctgctcactaacttctttctctccgcaacaccactcgtacaccattctgttgcaccgacttcaactccaattcctcggaatt 100  Q
    |||||||||||| |||| |||||||| ||||||| |||||||||||||||| || |||||||||| |||||||||||||| |||||||||||||| ||||    
T  13440074 gccttctctatgttatccctgctcaccaacttctctctctccgcaacaccattcttacaccattccgttgcaccgacttccactccaattcctcgaaatt 13440173  T
Q  101 gtgttataagtttctcattgtagaattgatctccatgaaccggccatgttatcattggaactcccgcactaacagcctctacggttgagttccccccgca 200  Q
    ||||||  |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||  ||||||||||||||||    
T  13440174 gtgttaccagtttctcgttgtagaattgatctccatgaaccggccacgttatcattggaactcccgcactaacagactctacaattgagttccccccgca 13440273  T
Q  201 atgcgtcataaatccccccactgcagggtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacccttcttcccgatatttctctcttca 300  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||  || |||||||||||     
T  13440274 atgcgtcataaatccccccaccgcagggtggctcaatatcttaacttgtggggcccaacccttaatgatcaaacccatcctcctaatgtttctctcttcg 13440373  T
Q  301 aatcccttcggtaacca 317  Q
    |||||||| || |||||    
T  13440374 aatccctttggcaacca 13440390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 12540559 - 12540869
Alignment:
Q  1 gccttctctatgctatctctgctcactaacttctttctctccgcaacaccactcgtacaccattctgttgcaccgacttcaactccaattcctcggaatt 100  Q
    ||||||||||||| ||||||||  || ||||||||||||||| ||  |||| | |||||||||||||||||||| ||||| ||||||||||||||||  |    
T  12540559 gccttctctatgccatctctgccaaccaacttctttctctccccattaccatttgtacaccattctgttgcacctacttctactccaattcctcggacct 12540658  T
Q  101 gtgttataagtttctcattgtagaattgatctccatgaaccggccatgttatcattggaactcccgcactaacagcctctacggttgagttccccccgca 200  Q
    ||||||| |||||||| ||| | || ||||||||||||  |||||| |||||||||||||||||||||| ||||||||||||  ||||||| ||||| ||    
T  12540659 gtgttattagtttctcgttgaataagtgatctccatgacacggccacgttatcattggaactcccgcaccaacagcctctacaattgagtttcccccaca 12540758  T
Q  201 atgcgtcataaatccccccactgcagggtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacccttcttcccgatatttctctcttca 300  Q
    ||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || || || |||||||| |||    
T  12540759 atgtgtcataaatccccccaccgcagggtggctcaatatcttaacctgtggggcccaacccctaatgatcaaacccttttttccaatgtttctctcctca 12540858  T
Q  301 aatcccttcgg 311  Q
    |||||||||||    
T  12540859 aatcccttcgg 12540869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 28385208 - 28385515
Alignment:
Q  1 gccttctctatgctatctctgctcactaacttctttctctccgcaacaccactcgtacaccattctgttgcaccgacttcaactccaattcctcggaatt 100  Q
    |||||||||||| ||||||||||||| ||||||||||||||| ||  |||| | ||||||||||| ||| |||| ||||| |||||||||| ||||| |     
T  28385208 gccttctctatgttatctctgctcaccaacttctttctctccccattaccatttgtacaccattccgttacacctacttccactccaattcttcggactg 28385307  T
Q  101 gtgttataagtttctcattgtagaattgatctccatgaaccggccatgttatcattggaactcccgcactaacagcctctacggttgagttccccccgca 200  Q
     |||||| | ||||||||||  ||| |||||| |||||   ||||| |||||||||||||||||||| | ||||||||||||  |||||||||| |||||    
T  28385308 ttgttatcaatttctcattgctgaagtgatctgcatgacaaggccacgttatcattggaactcccgcgccaacagcctctacaattgagttccctccgca 28385407  T
Q  201 atgcgtcataaatccccccactgcagggtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacccttcttcccgatatttctctcttca 300  Q
    ||| |||| |||||||||||| ||||||| ||||||||||  ||||||||||||||||||||| || || ||||||||||| || || |||||||| |||    
T  28385408 atgtgtcagaaatccccccaccgcagggttgctcaatatcagaacttgtggggcccaacccctgattatgaaacccttctttccaatgtttctctcctca 28385507  T
Q  301 aatccctt 308  Q
    ||||||||    
T  28385508 aatccctt 28385515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 173; Significance: 6e-93; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 3417832 - 3417516
Alignment:
Q  1 gccttctctatgctatctctgctcactaacttctttctctccgcaacaccactcgtacaccattctgttgcaccgacttcaactccaattcctcggaatt 100  Q
    ||||||||||||  |||||||||||| ||||||||||||||| ||| ||||   | || ||||||||||||||| ||||| |||||||||||||||| ||    
T  3417832 gccttctctatgtcatctctgctcaccaacttctttctctccccaataccatgtgcacgccattctgttgcacctacttccactccaattcctcggactt 3417733  T
Q  101 gtgttataagtttctcattgtagaattgatctccatgaaccggccatgttatcattggaactcccgcactaacagcctctacggttgagttccccccgca 200  Q
    ||||||| |||||||||||| | ||||||||||||||| ||||||| ||||||||||||||||| |||| ||||||||| ||   |||||||||||| ||    
T  3417732 gtgttattagtttctcattgaacaattgatctccatgacccggccacgttatcattggaactcctgcaccaacagcctcaacaaatgagttccccccaca 3417633  T
Q  201 atgcgtcataaatccccccactgcagggtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacccttcttcccgatatttctctcttca 300  Q
    ||| |||||||||||||| || ||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||| || || |||||||| |||    
T  3417632 atgtgtcataaatccccctaccgcagggtggctcaatatctgaacctgtggggcccaacccctaacgatcaaacccttctttccaatgtttctctcctca 3417533  T
Q  301 aatcccttcggtaacca 317  Q
    ||||||||||| |||||    
T  3417532 aatcccttcggcaacca 3417516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 48965203 - 48965519
Alignment:
Q  1 gccttctctatgctatctctgctcactaacttctttctctccgcaacaccactcgtacaccattctgttgcaccgacttcaactccaattcctcggaatt 100  Q
    ||||||||||||||||| || ||||| | ||||| ||| ||  ||| |||| ||  |||||||||||||||||| ||||| |||||||| ||||| | ||    
T  48965203 gccttctctatgctatcactactcaccagcttctctctttcttcaaaaccagtcaaacaccattctgttgcaccaacttccactccaatccctcgcactt 48965302  T
Q  101 gtgttataagtttctcattgtagaattgatctccatgaaccggccatgttatcattggaactcccgcactaacagcctctacggttgagttccccccgca 200  Q
     |||||| ||||| || ||||||||||| ||||||||    |||||||| ||||| ||||| ||||||| ||||||||| || || |||||||  || ||    
T  48965303 ctgttatcagtttttcgttgtagaattgttctccatgtgaaggccatgtaatcatcggaacccccgcaccaacagcctccactgtggagttccaaccaca 48965402  T
Q  201 atgcgtcataaatccccccactgcagggtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacccttcttcccgatatttctctcttca 300  Q
    ||| ||||||||  | ||||| || ||||||||||  |||  ||| || || |||||||||||||| |||||||||||||| || || |||||||||||     
T  48965403 atgagtcataaaggcacccacagcggggtggctcagaatcagaacctgcggagcccaacccctaataatcaaacccttctttccaatgtttctctcttcg 48965502  T
Q  301 aatcccttcggtaacca 317  Q
    |||||||| ||||||||    
T  48965503 aatccctttggtaacca 48965519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 57 - 317
Target Start/End: Original strand, 48958074 - 48958337
Alignment:
Q  57 acaccattctgttgcaccgacttcaactccaattcctcggaattgtgttataagtttctcattgtagaattgatctccatgaaccggccatgttatcatt 156  Q
    |||||| ||||||||||| || || || ||||||||||| |  |  ||||| |  ||||||||||||||||| |||||||| |||||||| || ||||||    
T  48958074 acaccactctgttgcaccaacctccaccccaattcctcgcacattagttatcaacttctcattgtagaattgttctccatgcaccggccacgtgatcatt 48958173  T
Q  157 ggaactcccgcactaacagcctctacggttgagttccccccgcaatgcgtcataaatccccccactgcagggtggctcaatatcttaacttgtggggccc 256  Q
    ||||| ||||| ||||||||||| || || ||||||| ||||||||| ||||||||| | ||||| |||  ||||||||  |||  ||||||||||||||    
T  48958174 ggaacccccgcgctaacagcctccacagtggagttccacccgcaatgtgtcataaatgcacccacggcaatgtggctcagaatcaaaacttgtggggccc 48958273  T
Q  257 aacccctaatgatcaaacc---cttcttcccgatatttctctcttcaaatcccttcggtaacca 317  Q
    | |||||||||||||||||   |||||| || || ||||||||||| ||||| ||||| |||||    
T  48958274 accccctaatgatcaaacctttcttctttccaatgtttctctcttcgaatcctttcggcaacca 48958337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 57 - 317
Target Start/End: Original strand, 48961221 - 48961486
Alignment:
Q  57 acaccattctgttgcaccgacttcaactccaattcctcggaattgtgttataagtttctcattgtagaattgatctccatgaaccggccatgttatcatt 156  Q
    |||||||||||||||||| ||||||| |||||| || || |  |  ||||| |  ||||| ||||||||||| |||||||| || |||||||||||||||    
T  48961221 acaccattctgttgcaccaacttcaattccaataccccgcacatcagttatcaacttctcgttgtagaattgttctccatgtacgggccatgttatcatt 48961320  T
Q  157 ggaactcccgcactaacagcctctacggttgag--ttccccccgcaatgcgtcataaatccccccactgcagggtggctcaatatcttaacttgtggggc 254  Q
    || |  || |||||| ||||||| | ||| |||  |||| ||||||||||||||||||  | ||||| || | ||||| ||  ||| |||||||||||||    
T  48961321 gggatccctgcactaccagcctcaatggtggagagttccacccgcaatgcgtcataaacacacccaccgctgtgtggcccaggatcataacttgtggggc 48961420  T
Q  255 ccaacccctaatgatcaaacccttcttcc---cgatatttctctcttcaaatcccttcggtaacca 317  Q
    ||| ||| ||||||||||||||||||||    | || ||||||||||||||||| ||||| |||||    
T  48961421 ccaccccttaatgatcaaacccttcttcttttcaatgtttctctcttcaaatcctttcggcaacca 48961486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 112 - 317
Target Start/End: Complemental strand, 48912539 - 48912331
Alignment:
Q  112 ttctcattgtagaattgatctccatgaaccggccatgttatcattggaactcccgcactaacagcctctacggttgagttccccccgcaatgcgtcataa 211  Q
    ||||||||||| || || |||||||| | |||||| || ||||||||||| || |||||||| ||||| || || || |||| ||| ||||| |||||||    
T  48912539 ttctcattgtaaaactgttctccatgcatcggccacgtgatcattggaacccctgcactaactgcctcaacagtggaattccacccacaatgtgtcataa 48912440  T
Q  212 atccccccactgcagggtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacccttcttc---ccgatatttctctcttcaaatccctt 308  Q
    || | ||||| || | ||||||||  ||| |||| ||||| ||||||||| |||| |||| | ||||||||   |||||| ||||||||||||| |||||    
T  48912439 atgcacccacggctgtgtggctcagaatcataacctgtggagcccaacccttaataatcatagccttcttctttccgataattctctcttcaaacccctt 48912340  T
Q  309 cggtaacca 317  Q
     || |||||    
T  48912339 tggcaacca 48912331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 271
Target Start/End: Original strand, 48974103 - 48974262
Alignment:
Q  112 ttctcattgtagaattgatctccatgaaccggccatgttatcattggaactcccgcactaacagcctctacggttgagttccccccgcaatgcgtcataa 211  Q
    ||||| ||||||||||| ||  |||| || ||||| || ||||||||||| || |||||||| || || ||||| ||||||| ||||||||| ||||  |    
T  48974103 ttctcgttgtagaattgttcgtcatgcactggccacgtgatcattggaacccctgcactaacggcttccacggtggagttccacccgcaatgtgtcaaga 48974202  T
Q  212 atccccccactgcagggtggctcaatatcttaacttgtggggcccaacccctaatgatca 271  Q
    || | || |  ||||||||||  || |||   |||||||||||||| ||||| |||||||    
T  48974203 atgcaccgatagcagggtggcctaaaatcaccacttgtggggcccacccccttatgatca 48974262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 76; Significance: 5e-35; HSPs: 3)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 115 - 317
Target Start/End: Complemental strand, 6702 - 6497
Alignment:
Q  115 tcattgtagaattgatctccatgaaccggccatgttatcattggaactcccgcactaacagcctctacggttgagttccccccgcaatgcgtcataaatc 214  Q
    |||||||| ||||| |||||||| |||||||| || ||||| ||||| || |||||||||||||| || || || |||| ||| ||||||||||||||      
T  6702 tcattgtaaaattgttctccatgcaccggccacgtgatcatcggaacccctgcactaacagcctcaacagtggaattccacccacaatgcgtcataaacg 6603  T
Q  215 cccccactgcagggtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacccttcttc---ccgatatttctctcttcaaatcccttcgg 311  Q
    | ||||  ||   ||||||||| ||| |||||||||| |||||||||||||| |||||||||||||||   ||||||||||||||||| |||||||| ||    
T  6602 cacccagagctttgtggctcaaaatcataacttgtggagcccaacccctaataatcaaacccttcttctttccgatatttctctcttcgaatccctttgg 6503  T
Q  312 taacca 317  Q
     |||||    
T  6502 caacca 6497  T

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Target: scaffold0536; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 112 - 282
Target Start/End: Complemental strand, 10687 - 10517
Alignment:
Q  112 ttctcattgtagaattgatctccatgaaccggccatgttatcattggaactcccgcactaacagcctctacggttgagttccccccgcaatgcgtcataa 211  Q
    ||||||||||| ||||| |||||||| |  ||||| || ||||||||||| || |||||||| ||||| ||||| || |||| ||| ||||| |||||||    
T  10687 ttctcattgtaaaattgttctccatgcattggccacgtgatcattggaacccctgcactaaccgcctccacggtggaattccacccacaatgtgtcataa 10588  T
Q  212 atccccccactgcagggtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacccttcttc 282  Q
    |  | |||||  ||| |||||| |  ||| |||| || |||||||||||| |||| |||||||||||||||    
T  10587 acgcacccacaacagtgtggcttagaatcataacctgaggggcccaacccttaataatcaaacccttcttc 10517  T

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Target: scaffold0536; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 179
Target Start/End: Complemental strand, 1638 - 1580
Alignment:
Q  121 tagaattgatctccatgaaccggccatgttatcattggaactcccgcactaacagcctc 179  Q
    ||||||||||| | ||| || |||||||| |||||||||| ||| ||||||||||||||    
T  1638 tagaattgatcactatgtactggccatgtgatcattggaattcctgcactaacagcctc 1580  T

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Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 103 - 281
Target Start/End: Complemental strand, 12641684 - 12641506
Alignment:
Q  103 gttataagtttctcattgtagaattgatctccatgaaccggccatgttatcattggaactcccgcactaacagcctctacggttgagttccccccgcaat 202  Q
    ||||| || |||||||| ||||| || ||||| || || ||||| || ||||||||||  || |||||||||||||||||    ||||||  ||||||||    
T  12641684 gttatcagcttctcattatagaactgttctccttgcactggccacgtgatcattggaatccctgcactaacagcctctaccaaggagttcgacccgcaat 12641585  T
Q  203 gcgtcataaatccccccactgcagggtggctcaatatcttaacttgtggggcccaacccctaatgatcaaacccttctt 281  Q
    ||||||| ||| | ||||| |||| |||||| || ||| | ||||||||||||||  |||||||||| ||||| |||||    
T  12641584 gcgtcatgaatgcacccacagcagcgtggcttaaaatcattacttgtggggcccactccctaatgataaaacctttctt 12641506  T

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Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 142 - 282
Target Start/End: Complemental strand, 12590336 - 12590196
Alignment:
Q  142 ggccatgttatcattggaactcccgcactaacagcctctacggttgagttccccccgcaatgcgtcataaatccccccactgcagggtggctcaatatct 241  Q
    |||||||| ||||| |||| ||| |||||||| ||||| |||   || ||||  || ||||| ||||||||  | |||||||||  ||||||||  |||     
T  12590336 ggccatgtgatcatcggaattccagcactaaccgcctccacgacggaattccatccacaatgtgtcataaacgcgcccactgcattgtggctcataatca 12590237  T
Q  242 taacttgtggggcccaacccctaatgatcaaacccttcttc 282  Q
    | |||||||||||||||||||||||||||||||||||||||    
T  12590236 ttacttgtggggcccaacccctaatgatcaaacccttcttc 12590196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 281
Target Start/End: Complemental strand, 12483716 - 12483492
Alignment:
Q  57 acaccattctgttgcaccgacttcaactccaattcctcggaattgtgttataagtttctcattgtagaattgatctccatgaaccggccatgttatcatt 156  Q
    |||||| ||||||||||||||||| || ||||| ||||| |  |  ||||| |||||||||||||| || || || || ||||||||||| || ||||||    
T  12483716 acaccactctgttgcaccgacttccacaccaatccctcgcacattagttatgagtttctcattgtaaaaatgttcaccgtgaaccggccacgtgatcatt 12483617  T
Q  157 ggaactcccgcactaacagcctctacggttgagttccccccgcaatgcgtcataaatccccccactgcagggtggctcaatatcttaacttgtggggccc 256  Q
    ||||  || |||||||| || || ||    || ||||  || || || ||||||||| | |||||||||||||||||||| |||   || ||||| ||||    
T  12483616 ggaatccctgcactaaccgcttccacaacagaattccatccacagtgagtcataaatgcacccactgcagggtggctcaaaatcagtacctgtggtgccc 12483517  T
Q  257 aacccctaatgatcaaacccttctt 281  Q
    | ||||| ||||| |||||| ||||    
T  12483516 accccctgatgattaaacccatctt 12483492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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