View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21582_low_14 (Length: 354)
Name: NF21582_low_14
Description: NF21582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21582_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 17 - 324
Target Start/End: Complemental strand, 11890183 - 11889876
Alignment:
| Q |
17 |
atttctacctctctgccttcaaaaagagcttctctgtatggtcttggagagcatacaaagagttcattcaagttgaaatcaaaccaaactttcactcttt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
11890183 |
atttctacctctctgccttcaaaaagagcttctctgtatggttttggagagcatacaaagagttctttcaagttgaaaccaaaccaaactttcactcttt |
11890084 |
T |
|
| Q |
117 |
ggaatgaagatattgttagttcaaatgttgatgtgaatctttatggctctcatccattttatttggatgtgagaaagggttcatctgatggaagagtgaa |
216 |
Q |
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||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11890083 |
ggaatgaagatattggtagttctaatgttgatgtgaatctttatggctctcatccattttatttggatgtgagaaagggttcatctgatggaagagtgaa |
11889984 |
T |
|
| Q |
217 |
aagtgggaccacacatggtgttttacttcttaatagtaatggaatggatgttgtttatagcggtgatcgtcttacttataaggtgattggtggtgttttt |
316 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11889983 |
aagtgggactacacatggtgttttacttcttaatagtaatggaatggatgttgtttatagcggtgatcgtcttacttataaggtgattggtggtgttttt |
11889884 |
T |
|
| Q |
317 |
gatttgta |
324 |
Q |
| |
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|||||||| |
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| T |
11889883 |
gatttgta |
11889876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 17 - 324
Target Start/End: Complemental strand, 11902527 - 11902220
Alignment:
| Q |
17 |
atttctacctctctgccttcaaaaagagcttctctgtatggtcttggagagcatacaaagagttcattcaagttgaaatcaaaccaaactttcactcttt |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
11902527 |
atttctacctctctgccttcaaaaagagcttctctgtatggttttggagagcatacaaagagttctttcaagttgaaaccaaaccaaactttcactcttt |
11902428 |
T |
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| Q |
117 |
ggaatgaagatattgttagttcaaatgttgatgtgaatctttatggctctcatccattttatttggatgtgagaaagggttcatctgatggaagagtgaa |
216 |
Q |
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||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11902427 |
ggaatgaagatattggtagttctaatgttgatgtgaatctttatggctctcatccattttatttggatgtgagaaagggttcatctgatggaagagtgaa |
11902328 |
T |
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| Q |
217 |
aagtgggaccacacatggtgttttacttcttaatagtaatggaatggatgttgtttatagcggtgatcgtcttacttataaggtgattggtggtgttttt |
316 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11902327 |
aagtgggactacacatggtgttttacttcttaatagtaatggaatggatgttgtttatagcggtgatcgtcttacttataaggtgattggtggtgttttt |
11902228 |
T |
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| Q |
317 |
gatttgta |
324 |
Q |
| |
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|||||||| |
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| T |
11902227 |
gatttgta |
11902220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 236 - 324
Target Start/End: Complemental strand, 11896642 - 11896554
Alignment:
| Q |
236 |
gttttacttcttaatagtaatggaatggatgttgtttatagcggtgatcgtcttacttataaggtgattggtggtgtttttgatttgta |
324 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11896642 |
gttttacttcttaatagtaatggaatggatgttgtttatagcggtgatcgtcttacttataaggtgattggtggtgtttttgatttgta |
11896554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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