View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21582_low_20 (Length: 295)
Name: NF21582_low_20
Description: NF21582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21582_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 12 - 281
Target Start/End: Complemental strand, 7794527 - 7794258
Alignment:
| Q |
12 |
gaatatgaaataggtaactgagtagatagaaattgagtttttaattacttgacttagtttgtttatattcctattgtcaagtatttaaccaaattagtgt |
111 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
7794527 |
gaatatgaaataggtaactgagtagatagaaaatgagtttttaattacttgacttagtttgtttatattcctattgttaattatttaaccaaattagtgt |
7794428 |
T |
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| Q |
112 |
gctaattaaaagttgatagtgaaatagcaactaacgatgtgattgtgaactagacatctaactttcatacttaggtagattaggtaacaatcaaatttaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
7794427 |
gctaattaaaagttgatagtgaaatagcaactaacgatgtgattgtgaactagacatctaactttcatacttaggtagattaggtaaccatcaaatttaa |
7794328 |
T |
|
| Q |
212 |
gtgtgttaatattgaacatagtttgaccaaccctacttgggttagtgaagaaggttcttattgcaaagtg |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7794327 |
gtgtgttaatattgaacatagtttgaccaaccctacttgggttagtgaagaaggttcttattgcaaagtg |
7794258 |
T |
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