View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21582_low_21 (Length: 239)
Name: NF21582_low_21
Description: NF21582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21582_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 3744845 - 3744620
Alignment:
| Q |
1 |
tgtgcttcctgagaatgctaatactgatgccgtttctgctgtttctcaagatggggttctgagtgttactgttcagaaattgcctcctcctcagcctaag |
100 |
Q |
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| T |
3744845 |
tgtgcttcctgagaatgctaatactgatgctgtttctgctgtttgtcaagatggggttctgagtgttactgttcagaaattgcctcctcctcagcctaag |
3744746 |
T |
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| Q |
101 |
aagcccagaaccattcaagttcagattgcttgaatttttgttttgaataatgatgtagtgtatgtgtgatggtctttgggggcagaagagtaccaggttg |
200 |
Q |
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| T |
3744745 |
aaacctagaaccattcaggttcaggttgcttgaatttttgttttgaataatgatgtagtgtatgtgtgatggtctttgggggcagaagagtactaggttg |
3744646 |
T |
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| Q |
201 |
ttttttaaggtcgtgcttgtgtgatg |
226 |
Q |
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| T |
3744645 |
ttttttaaggtcgtgcttgtgtgatg |
3744620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 134
Target Start/End: Original strand, 4084453 - 4084497
Alignment:
| Q |
90 |
ctcagcctaagaagcccagaaccattcaagttcagattgcttgaa |
134 |
Q |
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| T |
4084453 |
ctcagcctaagaaacccagaactattcaggttcagattgcttgaa |
4084497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 32 - 133
Target Start/End: Complemental strand, 48303015 - 48302914
Alignment:
| Q |
32 |
gtttctgctgtttctcaagatggggttctgagtgttactgttcagaaattgcctcctcctcagcctaagaagcccagaaccattcaagttcagattgctt |
131 |
Q |
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| T |
48303015 |
gtttctgctgtttgtcaagatggtgttcttactgttactgttaataagttgcctcctcctgaacctaagaagcctaaaactattcaggttaaggttgctt |
48302916 |
T |
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| Q |
132 |
ga |
133 |
Q |
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|| |
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| T |
48302915 |
ga |
48302914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 94
Target Start/End: Original strand, 10462342 - 10462434
Alignment:
| Q |
5 |
cttcctgagaatgctaatactgatgccgtttctgctgtttctcaagatggggttctgagtgttactgttc---agaaattgcctcctcctcag |
94 |
Q |
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| T |
10462342 |
cttcctgagaatgctaatgctgatgctgtttcggctgtgtgtcgagatggggtgcttactgttactgctctcaagaaattgcctcctcctcag |
10462434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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