View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21582_low_3 (Length: 605)
Name: NF21582_low_3
Description: NF21582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21582_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 270; Significance: 1e-150; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 27 - 371
Target Start/End: Original strand, 34876508 - 34876854
Alignment:
| Q |
27 |
attatcaactgcaccatatgaatagagtcggactaacgtataaactttataaaaacctccatatgatatgatgatgggttatagaaaatcattttagann |
126 |
Q |
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| T |
34876508 |
attatcaactgcaccatatgaatagagtcggagtaacgtataaactttataaaaacctccatatgatatgatgatgagttataaaaaatcattttagatt |
34876607 |
T |
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| Q |
127 |
nnnnnnattgaagtaatttacattatacgtgaaattgacttcctcgttagattgcagtttcagtttgaattaacactttccgctattatgatgtttttcc |
226 |
Q |
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| T |
34876608 |
ttttttattgaagtaatttacattatacgtgaaattgacttcctcgttagattgcagtttcagtttgcattaacactttacgatattatgatgtttt-cc |
34876706 |
T |
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| Q |
227 |
cttaggaagacggaaaccagtttcattgtataattgttaaatgaagtttgaagctac---actaattaaattttggaggagaaatgaatcaattgttttc |
323 |
Q |
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| T |
34876707 |
cttaggaagacggaaaacaggttcattgtataattgttaaatgaagtttgaagctactacactaattaaattttggaggagaaatgaatcaattgttttc |
34876806 |
T |
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| Q |
324 |
atccacaaattaaataatcaagttggtctgtttgtccgaatcaccata |
371 |
Q |
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| T |
34876807 |
atccacaaattaaataatcaagttggtctgtttgtccgaatcaccata |
34876854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 408 - 527
Target Start/End: Complemental strand, 34875699 - 34875580
Alignment:
| Q |
408 |
tcatgtaactggaaaaaatgaaagtttttagtatttgtagagactctatttgttttgtagagtctttatttgttttagttagtgtaggtttaagccaatt |
507 |
Q |
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| T |
34875699 |
tcatgtaaccggaaaaaatgaaagtttttagtatttgtagagactttatttgttttgtagagtctttatttgttttagttagtgtaggtttaagccaatt |
34875600 |
T |
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| Q |
508 |
ataagagttagttaaataaa |
527 |
Q |
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| T |
34875599 |
ataagagttagttaaataaa |
34875580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 520 - 566
Target Start/End: Original strand, 34875381 - 34875427
Alignment:
| Q |
520 |
taaataaaaatattttttgtttgattaagtgaattagacaaggttgt |
566 |
Q |
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| T |
34875381 |
taaataaaaatattttttgtttgattaagtgaattagacaaggttgt |
34875427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 561 - 589
Target Start/End: Complemental strand, 34875578 - 34875550
Alignment:
| Q |
561 |
ggttgttttatagtatttattcgattaga |
589 |
Q |
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| T |
34875578 |
ggttgttttatagtatttattcgattaga |
34875550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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