View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21582_low_4 (Length: 551)

Name: NF21582_low_4
Description: NF21582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21582_low_4
NF21582_low_4
[»] chr4 (4 HSPs)
chr4 (126-533)||(11412827-11413234)
chr4 (10-78)||(11412442-11412510)
chr4 (84-130)||(19731598-19731644)
chr4 (84-124)||(1826151-1826191)
[»] chr7 (3 HSPs)
chr7 (77-130)||(17723120-17723173)
chr7 (84-131)||(29970458-29970505)
chr7 (405-488)||(15598402-15598488)
[»] chr3 (1 HSPs)
chr3 (404-471)||(34875102-34875169)
[»] chr8 (4 HSPs)
chr8 (84-124)||(8302294-8302334)
chr8 (84-130)||(20826785-20826831)
chr8 (84-130)||(41662977-41663023)
chr8 (31-78)||(35544708-35544758)
[»] chr1 (1 HSPs)
chr1 (402-529)||(20807390-20807524)
[»] chr6 (1 HSPs)
chr6 (84-130)||(17555783-17555829)
[»] chr5 (1 HSPs)
chr5 (84-130)||(25855048-25855094)


Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 126 - 533
Target Start/End: Original strand, 11412827 - 11413234
Alignment:
Q  126 gaaaaggataacaaatagaaaatagtatgaaatacctttctatctagcacaattttggtacgttctttcatcgattttgtggagcagaggtagttgacaa 225  Q
    |||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  11412827 gaaaaggataacaaaatgaaaatagtatgaaatatctttctatctagcacaattttggtatgttctttcatcgattttgtggagcagaggtagatgacaa 11412926  T
Q  226 aggctatgatgcttgaattgataataacgtgggtaatgcttgaaaactccataaaataaaatgacccatttttcgattttgctcctctgatacaaaaact 325  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  11412927 aggctatgatgcttgaattgataaaaacgtgggtaatgcttgaaaactccataaaacaaaatgacccatttttcgattttgttcctctgatacaaaaact 11413026  T
Q  326 actaactgtgacataatatgatttttattccatgtgactgatgataagtggaaaaactatctaatgaattttatcaagaatgttcgttaattaatgttat 425  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11413027 actaactctgacataatatgatttttattccatgtgactgatgataagtggaaaaactatctaatgaattttaccaagaatgttcgttaattaatgttat 11413126  T
Q  426 tattacttatgtaatctcttaatcaagtttcaactatattatatttaacctattttttatttactatgcttattgtgctcatcattgacccgtgtgaagc 525  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  11413127 tattacttatgtaatctcttaatcaagtttcaactatattatatttaacctattttttatttactatgcttattgtgcttatcattgacccgtgtgaagc 11413226  T
Q  526 acgggagc 533  Q
    ||||||||    
T  11413227 acgggagc 11413234  T

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Target: chr4; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 11412442 - 11412510
Alignment:
Q  10 aagaatataatcaatgaacaaaattgaaaaagtgaaaagctattataccttcacacagatcttgcgatc 78  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  11412442 aagaatataatcaatgaacagaattgaaaaagtgaaaagctattataccttcacacagatcttgcgatc 11412510  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 84 - 130
Target Start/End: Original strand, 19731598 - 19731644
Alignment:
Q  84 aaatgttggcaagatatgcctggttatactaattttgttcgcgaaaa 130  Q
    ||||| ||||| |||||||||||||||| |||||||||||| |||||    
T  19731598 aaatgctggcaggatatgcctggttataataattttgttcgtgaaaa 19731644  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 84 - 124
Target Start/End: Original strand, 1826151 - 1826191
Alignment:
Q  84 aaatgttggcaagatatgcctggttatactaattttgttcg 124  Q
    |||||||||||||||||||||||||||  | ||||||||||    
T  1826151 aaatgttggcaagatatgcctggttatgatgattttgttcg 1826191  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 77 - 130
Target Start/End: Complemental strand, 17723173 - 17723120
Alignment:
Q  77 tcttttaaaatgttggcaagatatgcctggttatactaattttgttcgcgaaaa 130  Q
    |||||| |||||||||||||||||||||||||||| | |||||||||| |||||    
T  17723173 tcttttgaaatgttggcaagatatgcctggttatagtgattttgttcgagaaaa 17723120  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 84 - 131
Target Start/End: Complemental strand, 29970505 - 29970458
Alignment:
Q  84 aaatgttggcaagatatgcctggttatactaattttgttcgcgaaaag 131  Q
    |||||||||||||||||||| ||||||||| |||||||||| ||||||    
T  29970505 aaatgttggcaagatatgccaggttatactgattttgttcgtgaaaag 29970458  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 405 - 488
Target Start/End: Complemental strand, 15598488 - 15598402
Alignment:
Q  405 atgttcgttaattaatgttatt---attacttatgtaatctcttaatcaagtttcaactatattatatttaacctattttttattta 488  Q
    ||||||||||||||||||||||   ||||||||||| || || |||| |||| |||| |  |||||||||||| | ||||| |||||    
T  15598488 atgttcgttaattaatgttattattattacttatgtgatgtcgtaatgaagtctcaaatgcattatatttaacatgtttttaattta 15598402  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 404 - 471
Target Start/End: Original strand, 34875102 - 34875169
Alignment:
Q  404 aatgttcgttaattaatgttattattacttatgtaatctcttaatcaagtttcaactatattatattt 471  Q
    ||||||||||||||||||||||||||||| ||||||| |  |||| || |||||| ||||| ||||||    
T  34875102 aatgttcgttaattaatgttattattactcatgtaatgttgtaatgaaatttcaattatatcatattt 34875169  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 84 - 124
Target Start/End: Complemental strand, 8302334 - 8302294
Alignment:
Q  84 aaatgttggcaagatatgcctggttatactaattttgttcg 124  Q
    |||||||||||||||||||||||||||| | ||||||||||    
T  8302334 aaatgttggcaagatatgcctggttataatgattttgttcg 8302294  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 84 - 130
Target Start/End: Complemental strand, 20826831 - 20826785
Alignment:
Q  84 aaatgttggcaagatatgcctggttatactaattttgttcgcgaaaa 130  Q
    |||||||||||||| ||||||||||||| | |||||||||| |||||    
T  20826831 aaatgttggcaagacatgcctggttataatgattttgttcgtgaaaa 20826785  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 84 - 130
Target Start/End: Original strand, 41662977 - 41663023
Alignment:
Q  84 aaatgttggcaagatatgcctggttatactaattttgttcgcgaaaa 130  Q
    |||||||||||||||||||||| ||||| | |||||||||| |||||    
T  41662977 aaatgttggcaagatatgcctgattataatgattttgttcgtgaaaa 41663023  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 31 - 78
Target Start/End: Complemental strand, 35544758 - 35544708
Alignment:
Q  31 aattgaaaaagtgaaaagctattat---accttcacacagatcttgcgatc 78  Q
    |||||||||||| ||||||||||||   ||||| |||||||||||||||||    
T  35544758 aattgaaaaagttaaaagctattattatacctttacacagatcttgcgatc 35544708  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 529
Target Start/End: Original strand, 20807390 - 20807524
Alignment:
Q  402 agaatgttcgttaattaatgttattatta---cttatgtaatctcttaatcaagtttcaactatattatatttaacctattttttatttactatgct--- 495  Q
    |||||||||||||||||||||||||||||   || |||| || || ||||  ||||||||   ||||||||||||  |  |||| ||||| ||||||       
T  20807390 agaatgttcgttaattaatgttattattattactcatgtgatgtcgtaatggagtttcaatagtattatatttaatgtgcttttaatttattatgctcat 20807489  T
Q  496 -tattgtgctcatcattgacccgtgtgaagcacgg 529  Q
     ||||||||||||||||  |||||| |||||||||    
T  20807490 atattgtgctcatcattttcccgtgcgaagcacgg 20807524  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 84 - 130
Target Start/End: Original strand, 17555783 - 17555829
Alignment:
Q  84 aaatgttggcaagatatgcctggttatactaattttgttcgcgaaaa 130  Q
    |||||||||||||| ||||||||||||| | |||||||||| |||||    
T  17555783 aaatgttggcaagacatgcctggttataatgattttgttcgtgaaaa 17555829  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 84 - 130
Target Start/End: Original strand, 25855048 - 25855094
Alignment:
Q  84 aaatgttggcaagatatgcctggttatactaattttgttcgcgaaaa 130  Q
    |||||||||||||| ||||||||||||| | |||||||||| |||||    
T  25855048 aaatgttggcaagacatgcctggttataatgattttgttcgtgaaaa 25855094  T

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