View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21582_low_5 (Length: 479)
Name: NF21582_low_5
Description: NF21582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21582_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 18 - 466
Target Start/End: Complemental strand, 41027102 - 41026654
Alignment:
| Q |
18 |
gtatattggttcttgtttgtcccccttgtttagtaaccaatagttctacatgtgaaatggaacctgagactttcttctcgtctcctcattcataatatta |
117 |
Q |
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| T |
41027102 |
gtatattggttcttgtttggcccccttgtttagtaaccaataattctacatgtgaaatggaacctgagactttcttctcgtctcctcattcataatatta |
41027003 |
T |
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| Q |
118 |
ctctcaataaggtcaattgacaacataccatgaacaaaagaattatagaatgacattcttaaaattttcacaactcgtgcaaggaaccaagaagaaataa |
217 |
Q |
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| T |
41027002 |
ctctcaataaggtcaattgacaacacaccatgaacaaaagaattatagaatgacattcttaaaatttccacaactcgtgcaaggaaccaagaagaaataa |
41026903 |
T |
|
| Q |
218 |
cccctgaacttcgtcatcatacttaatacttgtagcagaaagttgattcatagttccttggaaagtaatgaaatgatatgcgtaatccatcttgaggcgt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
41026902 |
cccctgaacttcgtcatcatacttaatacttgtagcagaaagttgattcatagttccttggaaagtaatgaaatgatatgcctaatccatcttgaggcgt |
41026803 |
T |
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| Q |
318 |
cgaacttaacatcttcattatcaaatacatcttgttattaaccgtctattttgcatacatccacacaaacttatcgcatacatgcctaagtagtagggta |
417 |
Q |
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| T |
41026802 |
caaacttaacatcttcattatcaaatacatcttgttattaaccgtctattttgcatacatccacacaaacttatcgcatacatgcctaagtagtagggta |
41026703 |
T |
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| Q |
418 |
tgttgatcaatagtcttatcaccaagattctctacatcaaacacaggtt |
466 |
Q |
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| T |
41026702 |
tgttgatcaatagtcttatcaccaagattctctacatcaaacacaggtt |
41026654 |
T |
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