View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21582_low_7 (Length: 439)
Name: NF21582_low_7
Description: NF21582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21582_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Complemental strand, 35370613 - 35370186
Alignment:
| Q |
1 |
tgtgatgtaatgagtgaaacatatggaaaccaagaagaaaataaattagtctgtggactttgattgtagaagttatgaatttcattacaatattaa-cat |
99 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
35370613 |
tgtgatgtaatgagtgaaacctatggaaaccaagaagaaaataaattagtatatggactttgattgtagaagttatgaatttcattacaatattaaacat |
35370514 |
T |
|
| Q |
100 |
tgtaaacttacgatggtgtgtaagagagatacttcaattgaggaaagtatgagaagagcttcttaggaaagaactcaaagttgcaatgacccatattgtt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35370513 |
tgtaaacttacgatggtgtgtaagagagatacttcaattggggaaagtatgagaagagcttcttaggaaagaactcaaagttgcaatgacccatattgtt |
35370414 |
T |
|
| Q |
200 |
catgaaatcaatgtaaaatatatagccatatagtgcagccacagatgattttttgatgaacaatgttgttaacattggtatagcaaaaagtgtaaaatat |
299 |
Q |
| |
|
||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35370413 |
catgaaatcaatgaaaaagacatagccatatagtgcagccacagatgattttttgatgaacaatgttgttaacattggtatagcaaaaagtgtaaaatat |
35370314 |
T |
|
| Q |
300 |
gacaaatgctccgcaaatgggtgtgccacagctgtcc----nnnnnnnnnngaacgttacttccaaatgaaattttgttatgtaatggacaaaaatgaat |
395 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35370313 |
gacaaatgctcggcaaatgggtgtgccacagctgtccaaaaaaaaaaaaaagaacgttacttccaaatgaaattttgttatgtaatggacaaaaatgaat |
35370214 |
T |
|
| Q |
396 |
taaagtccttgcttcctatgatcttttt |
423 |
Q |
| |
|
|||||||||||||||||||||| ||||| |
|
|
| T |
35370213 |
taaagtccttgcttcctatgattttttt |
35370186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 74 - 335
Target Start/End: Complemental strand, 35381102 - 35380840
Alignment:
| Q |
74 |
tatgaatttcatta-caatattaacattgtaaacttacgatggtgtgtaagagagatacttcaattgaggaaagtatgagaagagcttcttaggaaagaa |
172 |
Q |
| |
|
|||||| ||||||| ||||| |||||||||||||||||||||||||||| ||||||||||| || |||||||| |||| ||| |||||||||||||| |
|
|
| T |
35381102 |
tatgaagttcattaacaatagtaacattgtaaacttacgatggtgtgtatgagagatactttaaaatgggaaagtaagagaggagtttcttaggaaagaa |
35381003 |
T |
|
| Q |
173 |
ctcaaagttgcaatgacccatattgttcatgaaatcaatgtaaaatatatagccatatagtgcagccacagatgattttttgatgaacaatgttgttaac |
272 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||| || ||||| ||||||||||||||||| ||| |
|
|
| T |
35381002 |
ctcaaagttgcaatgacccatattgttcatgaaatcaatgtaaaatatataaccatacaatgcagccacggaagatttattgatgaacaatgttgtcaac |
35380903 |
T |
|
| Q |
273 |
attggtatagcaaaaagtgtaaaatatgacaaatgctccgcaaatgggtgtgccacagctgtc |
335 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
35380902 |
attgggatagcaaaaagtgtaaaatatgacaaatgctccgcaaatgggtgtgcgacagctgtc |
35380840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 104 - 335
Target Start/End: Complemental strand, 35355065 - 35354834
Alignment:
| Q |
104 |
aacttacgatggtgtgtaagagagatacttcaattgaggaaagtatgagaagagcttcttaggaaagaactcaaagttgcaatgacccatattgttcatg |
203 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||||| |||| ||| |||||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
35355065 |
aacttacgatggtgtgtatgagagatacttcaaaatgggaaagtaagagaggagtttcttaggaatgaactcaaagttgcaatgacccatgttgttcatg |
35354966 |
T |
|
| Q |
204 |
aaatcaatgtaaaatatatagccatatagtgcagccacagatgattttttgatgaacaatgttgttaacattggtatagcaaaaagtgtaaaatatgaca |
303 |
Q |
| |
|
||||||||| |||| | |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
35354965 |
aaatcaatgaaaaagacatagccatatagtgcagccacagaagattttttgatgaacaatgttgtcaacattggtatagcaaaaagtgtaaaatatgaca |
35354866 |
T |
|
| Q |
304 |
aatgctccgcaaatgggtgtgccacagctgtc |
335 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |
|
|
| T |
35354865 |
aatgctccgcaaatgggtgtgtcacagctgtc |
35354834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 113; Significance: 5e-57; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 103 - 335
Target Start/End: Complemental strand, 19684716 - 19684484
Alignment:
| Q |
103 |
aaacttacgatggtgtgtaagagagatacttcaattgaggaaagtatgagaagagcttcttaggaaagaactcaaagttgcaatgacccatattgttcat |
202 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||| |||||||| |||||||| |||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
19684716 |
aaacttacgatggtgtgtatgtgagatacttcaattggggaaagtaggagaagagtttcttaggaaagaactcaaaattgcaatgacccatgttgttcat |
19684617 |
T |
|
| Q |
203 |
gaaatcaatgtaaaatatatagccatatagtgcagccacagatgattttttgatgaacaatgttgttaacattggtatagcaaaaagtgtaaaatatgac |
302 |
Q |
| |
|
||||| |||||||| ||||| ||||| | |||| ||||| |||||||| |||||||||||||| |||||||||||| ||||||||| ||||||| | |
|
|
| T |
19684616 |
aaaatcgatgtaaaagatataaccatacaatgcaaccacactcgattttttcatgaacaatgttgtcaacattggtataagaaaaagtgtgaaatatgcc |
19684517 |
T |
|
| Q |
303 |
aaatgctccgcaaatgggtgtgccacagctgtc |
335 |
Q |
| |
|
|| ||| |||||||| |||| ||| |||||| |
|
|
| T |
19684516 |
aacatctcagcaaatggatgtgtcaccgctgtc |
19684484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 103 - 335
Target Start/End: Original strand, 19630110 - 19630343
Alignment:
| Q |
103 |
aaacttacgatggtgtgtaagagagatacttcaattgaggaaagtatgagaagagcttcttaggaaagaactcaaagttgcaatgacccatattgttcat |
202 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| | |||||||| |||||||| |||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
19630110 |
aaacttacgatggtgtgtacgagagatacttcaataggggaaagtaggagaagagtttcttaggaaagaactcaaaattgcaatgacccatgttgttcat |
19630209 |
T |
|
| Q |
203 |
gaaatcaatgtaaaatatatagccatatagtgcagccacagatgattttttgatgaacaatgttg-ttaacattggtatagcaaaaagtgtaaaatatga |
301 |
Q |
| |
|
||||| |||||||| ||||| ||||| | ||||| | ||| |||||||| | ||||| ||||| | || ||||| ||| ||||||||| ||||||| |
|
|
| T |
19630210 |
aaaatcgatgtaaaagatataaccatacaccgcagcaatagacgatttttttacgaacattgttgctcaatattgggataaaaaaaagtgtgaaatatgc |
19630309 |
T |
|
| Q |
302 |
caaatgctccgcaaatgggtgtgccacagctgtc |
335 |
Q |
| |
|
||| ||| |||||||||||| |||||||||| |
|
|
| T |
19630310 |
caatatctcagcaaatgggtgtatcacagctgtc |
19630343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 150 - 215
Target Start/End: Complemental strand, 2251461 - 2251396
Alignment:
| Q |
150 |
gagaagagcttcttaggaaagaactcaaagttgcaatgacccatattgttcatgaaatcaatgtaa |
215 |
Q |
| |
|
||||||| |||||||||| ||||||||| || || ||||||| ||| |||||||||||||||||| |
|
|
| T |
2251461 |
gagaagactttcttaggaatgaactcaaaattacagtgacccaaattattcatgaaatcaatgtaa |
2251396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 150 - 215
Target Start/End: Original strand, 2256736 - 2256801
Alignment:
| Q |
150 |
gagaagagcttcttaggaaagaactcaaagttgcaatgacccatattgttcatgaaatcaatgtaa |
215 |
Q |
| |
|
||||||| |||||||||| ||||||||| || || ||||||| ||| |||||||||||||||||| |
|
|
| T |
2256736 |
gagaagactttcttaggaatgaactcaaaattacagtgacccaaattattcatgaaatcaatgtaa |
2256801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University