View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21582_low_9 (Length: 431)
Name: NF21582_low_9
Description: NF21582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21582_low_9 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 16 - 424
Target Start/End: Original strand, 33800386 - 33800794
Alignment:
| Q |
16 |
cataattcttccttcccgcaattatctctagcaacaccatcccatagctgtatacatcgcttttctctgatatagcatagtttgttatccactcgggtgc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33800386 |
cataattcttccttcccgcaattatctctagcaacaccatcccatagctgtatacatcgcttttctctgatatagcatagtttgttatccactcgggtgc |
33800485 |
T |
|
| Q |
116 |
aaggtagccacgagttcctcttaatgtagtaaaaacatggctttcttctctattcataagcttggctaaaccaaagtctgaaactttggcaatgaaatga |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33800486 |
aaggtagccacgagttcctcttaatgtagtaaaaacatggctttcttctctattcataagcttggctaaaccaaagtctgaaactttggcaatgaaatga |
33800585 |
T |
|
| Q |
216 |
tcatctagaagtacattttcaggtttgatgtcacaatgaacaatctttgaatcacactcttgatgcagataagcaagtccttttgctgttcctaatgcta |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33800586 |
tcatctagaagtacattttcaggtttgatgtcacaatgaacaatctttgaatcacactcttgatgcagataagcaagtccttttgctgttcctaatgcta |
33800685 |
T |
|
| Q |
316 |
tattaaaccttgtatcccaatccaaaagaaattcacnnnnnnngttcttgaatatccatttatccaatgagttattagccatgtactcgtaaactagaag |
415 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33800686 |
tactaaaccttgtatcccaatccaaaagaaattcactttttttgttcttgaatatccatttatccaatgagttattagccatgtactcgtaaactagaag |
33800785 |
T |
|
| Q |
416 |
cctatgatt |
424 |
Q |
| |
|
||||||||| |
|
|
| T |
33800786 |
cctatgatt |
33800794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 16 - 422
Target Start/End: Original strand, 33804850 - 33805260
Alignment:
| Q |
16 |
cataattcttccttcccgcaattatctctagcaacaccatcccatagctgtatacatcgcttttctctgatatagcatagtttgttatccactcgggtgc |
115 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33804850 |
cataattcttccttcccccaattatctctagcaacaccatcccatagctgtatacatcacttttctctgatatagcatagtttgttatccactcgggtgc |
33804949 |
T |
|
| Q |
116 |
aagg---tagccacgagttcctcttaatgtagtaaaaacatggctttct-tctctattcataagcttggctaaaccaaagtctgaaactttggcaatgaa |
211 |
Q |
| |
|
|||| ||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
33804950 |
aaggaggtagccacgagttcctcttagtgttgtaaaaacatggcttttgctctctattcataagcttggctaaaccaaaatctgaaactttggcaatgaa |
33805049 |
T |
|
| Q |
212 |
atgatcatctagaagtacattttcaggtttgatgtcacaatgaacaatctttgaatcacactcttgatgcagataagcaagtccttttgctgttcctaat |
311 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
33805050 |
atgatcatcaagaagtacattttcaggtttcatgtcacaatgaacaatctttgagtcacactcttgatgcagatacgcaagtccttttgctgttcctaat |
33805149 |
T |
|
| Q |
312 |
gctatattaaaccttgtatcccaatccaaaagaaattcacnnnnnnngttcttgaatatccatttatccaatgagttattagccatgtactcgtaaacta |
411 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || || ||||||| |
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|
| T |
33805150 |
gctatactaaaccttgtatcccaatccaaaagaaattcacttattttcttcttgaatatccatttatccaatgagttattagccatataatcataaacta |
33805249 |
T |
|
| Q |
412 |
gaagcctatga |
422 |
Q |
| |
|
|||| |||||| |
|
|
| T |
33805250 |
gaagtctatga |
33805260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 16 - 422
Target Start/End: Complemental strand, 33813454 - 33813044
Alignment:
| Q |
16 |
cataattcttccttcccgcaattatctctagcaacaccatcccatagctgtatacatcgcttttctctgatatagcatagtttgttatccactcgggtgc |
115 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33813454 |
cataattcttccttcccccaattatctctagcaacaccatcccatagctgtatacatcacttttctctgatatagcatagtttgttatccactcgggtgc |
33813355 |
T |
|
| Q |
116 |
aagg---tagccacgagttcctcttaatgtagtaaaaacatggctttct-tctctattcataagcttggctaaaccaaagtctgaaactttggcaatgaa |
211 |
Q |
| |
|
|||| ||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
33813354 |
aaggaggtagccacgagttcctcttagtgttgtaaaaacatggcttttgctctctattcataagcttggctaaaccaaaatctgaaactttggcaatgaa |
33813255 |
T |
|
| Q |
212 |
atgatcatctagaagtacattttcaggtttgatgtcacaatgaacaatctttgaatcacactcttgatgcagataagcaagtccttttgctgttcctaat |
311 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
33813254 |
atgatcatcaagaagtacattttcaggtttcatgtcacaatgaacaatctttgagtcacactcttgatgcagatacgcaagtccttttgctgttcctaat |
33813155 |
T |
|
| Q |
312 |
gctatattaaaccttgtatcccaatccaaaagaaattcacnnnnnnngttcttgaatatccatttatccaatgagttattagccatgtactcgtaaacta |
411 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || || ||||||| |
|
|
| T |
33813154 |
gctatactaaaccttgtatcccaatccaaaagaaattcacttattttcttcttgaatatccatttatccaatgagttattagccatataatcataaacta |
33813055 |
T |
|
| Q |
412 |
gaagcctatga |
422 |
Q |
| |
|
|||| |||||| |
|
|
| T |
33813054 |
gaagtctatga |
33813044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 16 - 422
Target Start/End: Complemental strand, 31029122 - 31028716
Alignment:
| Q |
16 |
cataattcttccttcccgcaattatctctagcaacaccatcccatagctgtatacatcgcttttctctgatatagcatagtttgttatccactcgggtgc |
115 |
Q |
| |
|
|||||||||||| |||| | |||||||| ||||||| ||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
31029122 |
cataattcttccgtcccccgattatctcaagcaacatcatcccataactgtatacatcacttttctctgatatagcgtagtttgttatccactcaggtgc |
31029023 |
T |
|
| Q |
116 |
aaggtagccacgagttcctcttaatgtagtaaaaacatggctttcttctctattcataagcttggctaaaccaaagtctgaaactttggcaatgaaatga |
215 |
Q |
| |
|
|||||||||||| |||||||||| ||| |||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
31029022 |
aaggtagccacgtgttcctcttagtgtcgtaaaaacatggctttgttctctattcatgagcttggctaaaccaaaatctgaaactttggcaatgaaatga |
31028923 |
T |
|
| Q |
216 |
tcatctagaagtacattttcaggtttgatgtcacaatgaacaatctttgaatcacactcttgatgcagataagcaagtccttttgctgttcctaatgcta |
315 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||| |||||||| || |||||||||||||||||||||| |
|
|
| T |
31028922 |
tcatctagaagtacattttcaggcttgatgtcacagtgaacaatctttgagtcacattcttgatgtagataagctagcccttttgctgttcctaatgcta |
31028823 |
T |
|
| Q |
316 |
tattaaaccttgtatcccaatccaaaagaaattcacnnnnnnngttcttgaatatccatttatccaatgagttattagccatgtactcgtaaactagaag |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
31028822 |
tattaaaccttgtatcccaatccaaaagaaatgcactttttttcttcttgaatatccatttatccaatgagttattagccatatactcataaactagaag |
31028723 |
T |
|
| Q |
416 |
cctatga |
422 |
Q |
| |
|
||||||| |
|
|
| T |
31028722 |
cctatga |
31028716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 16 - 421
Target Start/End: Complemental strand, 49464113 - 49463708
Alignment:
| Q |
16 |
cataattcttccttcccgcaattatctctagcaacaccatcccatagctgtatacatcgcttttctctgatatagcatagtttgttatccactcgggtgc |
115 |
Q |
| |
|
|||| ||||||||||| |||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| || ||||| |
|
|
| T |
49464113 |
catagttcttccttccaccaataatctctagcaataccatcccatagctgtatacatcacttttctctgatatagcatagcttgttatccattcaggtgc |
49464014 |
T |
|
| Q |
116 |
aaggtagccacgagttcctcttaatgtagtaaaaacatggctttcttctctattcataagcttggctaaaccaaagtctgaaactttggcaatgaaatga |
215 |
Q |
| |
|
|||||| ||||| ||||||| | ||| ||||||||||| |||| |||||||||||| || |||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
49464013 |
aaggtatccacgtgttcctcgcattgttgtaaaaacatgactttgttctctattcatgagtttggctaaaccaaaatctgaaactttggccatgaaatgg |
49463914 |
T |
|
| Q |
216 |
tcatctagaagtacattttcaggtttgatgtcacaatgaacaatctttgaatcacactcttgatgcagataagcaagtccttttgctgttcctaatgcta |
315 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||| || |||||||| ||||||| ||||| |
|
|
| T |
49463913 |
tcatctagaagcacattttcaggtttgatgtcacaatgaacaatctttgaatcacaatcttcatgtagataagctagcccttttgccgttcctactgcta |
49463814 |
T |
|
| Q |
316 |
tattaaaccttgtatcccaatccaaaagaaattcacnnnnnnngttcttgaatatccatttatccaatgagttattagccatgtactcgtaaactagaag |
415 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||| ||||| ||||||| ||| |
|
|
| T |
49463813 |
tattataccttgtatcccaatccaaaagaaaatcaccttttttcttcttgaatatccatttatccaacgagttattagccatatactcataaactaaaag |
49463714 |
T |
|
| Q |
416 |
cctatg |
421 |
Q |
| |
|
|||||| |
|
|
| T |
49463713 |
cctatg |
49463708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 174 - 261
Target Start/End: Original strand, 10070237 - 10070324
Alignment:
| Q |
174 |
agcttggctaaaccaaagtctgaaactttggcaatgaaatgatcatctagaagtacattttcaggtttgatgtcacaatgaacaatct |
261 |
Q |
| |
|
||||||||| ||||||||||||||| ||| || ||||||| |||||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
10070237 |
agcttggcttaaccaaagtctgaaattttagccatgaaataatcatctagaagcacattttcaggcttgatgtcacaatgaacaatct |
10070324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 24 - 341
Target Start/End: Original strand, 2528205 - 2528522
Alignment:
| Q |
24 |
ttccttcccgcaattatctctagcaacaccatcccatagctgtatacatcgcttttctctgatatagcatagtttgttatccactcgggtgcaaggtagc |
123 |
Q |
| |
|
|||||||| |||| ||||||| ||||||||| |||||||| || ||||| |||||||||||||||||||||||||| ||||| || ||||| | || | |
|
|
| T |
2528205 |
ttccttcctccaataatctctaacaacaccattccatagctataaacatcacttttctctgatatagcatagtttgtgatccattctggtgctaaataac |
2528304 |
T |
|
| Q |
124 |
cacgagttcctcttaatgtagtaaaaacatggctttcttctctattcataagcttggctaaaccaaagtctgaaactttggcaatgaaatgatcatctag |
223 |
Q |
| |
|
| | |||||||| | ||| |||||||||||||||| ||| | ||||| ||||| || | ||| || || ||||||||||| |||| |||||||| |
|
|
| T |
2528305 |
ctcttgttcctctcattgttgtaaaaacatggctttgttcacggttcatgagcttcgcaagaccgaaatcggaaactttggcttcaaaattatcatctaa |
2528404 |
T |
|
| Q |
224 |
aagtacattttcaggtttgatgtcacaatgaacaatctttgaatcacactcttgatgcagataagcaagtccttttgctgttcctaatgctatattaaac |
323 |
Q |
| |
|
||| |||||||| ||||| || |||||||||||||||||||| ||||| |||| ||||| |||||| |||||||| |||||||||| ||| || || || |
|
|
| T |
2528405 |
aagcacattttctggtttaatatcacaatgaacaatctttgagtcacaatcttcatgcaaataagctagtcctttggctgttcctactgcaattttgtac |
2528504 |
T |
|
| Q |
324 |
cttgtatcccaatccaaa |
341 |
Q |
| |
|
||||| | |||||||||| |
|
|
| T |
2528505 |
cttgtgttccaatccaaa |
2528522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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