View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21583_high_7 (Length: 304)
Name: NF21583_high_7
Description: NF21583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21583_high_7 |
 |  |
|
Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 11402355 - 11402055
Alignment:
| Q |
1 |
tttcaaggcttcctcctttgctttctctgtcttctgcaatattctgttgacgtgactttcgatacttccctgcaaggtatcaatatcgtggagctccatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11402355 |
tttcaaggcttcctcctttgctttctctgtcttctgcaatattctgttgatgtgacttttgatacttccctgcaaggtatcaatatcgtggagctccatt |
11402256 |
T |
 |
| Q |
101 |
atcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccataatattttctccatacacgctcaaatttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11402255 |
atcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccataatattttctccatacacgctcaaatttt |
11402156 |
T |
 |
| Q |
201 |
gtaacgggagaaaaatattgttccatgaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctgctcc |
300 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
11402155 |
gtaacaggagaaaaatattgttccatgaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctactcc |
11402056 |
T |
 |
| Q |
301 |
t |
301 |
Q |
| |
|
| |
|
|
| T |
11402055 |
t |
11402055 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 94 - 189
Target Start/End: Original strand, 11403127 - 11403222
Alignment:
| Q |
94 |
ctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccataatattttctccatacac |
189 |
Q |
| |
|
||||||||||||||||||||||||| ||| || ||| ||||| | |||| ||||||||||||||||| ||||| ||||| |||||||||||| |
|
|
| T |
11403127 |
ctccattatcgtagtcaccacatgaccaaactttatcgacatagtgtgtagaattttctccaccaccttgctatccggaatatcttctccatacac |
11403222 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 11403018 - 11403082
Alignment:
| Q |
1 |
tttcaaggcttcctcctttgctttctctgtcttctgcaatattctgttgacgtgactttcgatac |
65 |
Q |
| |
|
||||| ||||||||||||| |||| || ||||||| ||||||| ||||||| ||||||||||||| |
|
|
| T |
11403018 |
tttcatggcttcctcctttactttttcagtcttctccaatattttgttgacatgactttcgatac |
11403082 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 73 - 194
Target Start/End: Complemental strand, 42300683 - 42300562
Alignment:
| Q |
73 |
caaggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccata |
172 |
Q |
| |
|
||||||||| |||||||| ||||| |||||||||||||||||||||| ||||||| ||| | |||||| ||||||||||||||||| |||| | |
|
|
| T |
42300683 |
caaggtatcggtatcgtgggactccaatatcgtagtcaccacatgatcatatttcatcggcatggtgcatagaattttctccaccaccttgctatcttga |
42300584 |
T |
 |
| Q |
173 |
atattttctccatacacgctca |
194 |
Q |
| |
|
|||| |||||||||||| |||| |
|
|
| T |
42300583 |
atatcttctccatacactctca |
42300562 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 42913239 - 42913312
Alignment:
| Q |
2 |
ttcaaggcttcctcctttgctttctctgtcttctgcaatattctgttgacgtgactttcgatacttccctgcaa |
75 |
Q |
| |
|
|||||||||||||||||| |||| || ||||||| |||||||| |||||| || ||||| || ||||||||||| |
|
|
| T |
42913239 |
ttcaaggcttcctcctttactttttcagtcttctccaatattcggttgacatggctttcaatgcttccctgcaa |
42913312 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 194
Target Start/End: Original strand, 42913325 - 42913446
Alignment:
| Q |
73 |
caaggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccata |
172 |
Q |
| |
|
||||||||| |||| ||| ||||| |||||||||||||||||||||| ||||||| ||| | | |||| ||||||||||||||||| |||| | |
|
|
| T |
42913325 |
caaggtatcggtatcatgggactccaatatcgtagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatcttga |
42913424 |
T |
 |
| Q |
173 |
atattttctccatacacgctca |
194 |
Q |
| |
|
|||| |||||||||||| |||| |
|
|
| T |
42913425 |
atatcttctccatacactctca |
42913446 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 301
Target Start/End: Original strand, 42913497 - 42913571
Alignment:
| Q |
227 |
gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctgctcct |
301 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||| |||||| |||| ||| ||||| ||| ||||||| ||||| |
|
|
| T |
42913497 |
gaactggacatttcatacctttcgtattctctacgcagagactgcaactttgatttctgagctttctctactcct |
42913571 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 42300769 - 42300696
Alignment:
| Q |
2 |
ttcaaggcttcctcctttgctttctctgtcttctgcaatattctgttgacgtgactttcgatacttccctgcaa |
75 |
Q |
| |
|
|||||||||||||||||| | || || |||||| ||||||||||||||| || ||||| || ||||||||||| |
|
|
| T |
42300769 |
ttcaaggcttcctcctttacattttcactcttctccaatattctgttgacatggctttcaatgcttccctgcaa |
42300696 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 301
Target Start/End: Complemental strand, 42300511 - 42300437
Alignment:
| Q |
227 |
gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctgctcct |
301 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||| |||||| |||| ||| ||||| || ||||||| ||||| |
|
|
| T |
42300511 |
gaactggacatttcatacctttcgtattctctacgcagagactgcaactttgatttctaagctttctctactcct |
42300437 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 73 - 194
Target Start/End: Original strand, 27730425 - 27730546
Alignment:
| Q |
73 |
caaggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccata |
172 |
Q |
| |
|
|||||||||| |||| ||| ||||| |||||||||||||||||||||| ||||||| ||| | | |||| ||||||||||||||||| |||| | |
|
|
| T |
27730425 |
caaggtatcagtatcatgggactccaatatcgtagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatcttga |
27730524 |
T |
 |
| Q |
173 |
atattttctccatacacgctca |
194 |
Q |
| |
|
|||| |||||||||||| |||| |
|
|
| T |
27730525 |
atatcttctccatacactctca |
27730546 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 194
Target Start/End: Complemental strand, 45966183 - 45965976
Alignment:
| Q |
2 |
ttcaaggcttcctcctttgctttctctgtcttctgcaatattctgttgacgtgactttcgatacttccctg---------------caaggtatcaatat |
86 |
Q |
| |
|
|||||||||||||||||| |||| || ||||||| |||||||| |||||| || ||||| || |||||||| ||||||||| |||| |
|
|
| T |
45966183 |
ttcaaggcttcctcctttactttttcagtcttctccaatattcggttgacatggctttcaatgcttccctgcaactctgctaccgacaaggtatcgatat |
45966084 |
T |
 |
| Q |
87 |
cgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccataatattttctccata |
186 |
Q |
| |
|
| ||| ||||| |||||||||||||||||||||| ||||||| ||| | | |||| ||||||||||||||||| |||| ||||| ||||||||| |
|
|
| T |
45966083 |
catgggactccaatatcgtagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatcttgaatatcttctccata |
45965984 |
T |
 |
| Q |
187 |
cacgctca |
194 |
Q |
| |
|
||| |||| |
|
|
| T |
45965983 |
cactctca |
45965976 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 227 - 301
Target Start/End: Original strand, 27730597 - 27730671
Alignment:
| Q |
227 |
gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctgctcct |
301 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||| |||||| ||||| ||| ||||| ||| ||||||| ||||| |
|
|
| T |
27730597 |
gaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatttctgagctttctctactcct |
27730671 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 227 - 301
Target Start/End: Complemental strand, 45965925 - 45965851
Alignment:
| Q |
227 |
gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctgctcct |
301 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||| |||||| ||||| ||| ||||| ||| ||||||| ||||| |
|
|
| T |
45965925 |
gaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatttctgagctttctctactcct |
45965851 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 24146915 - 24146842
Alignment:
| Q |
2 |
ttcaaggcttcctcctttgctttctctgtcttctgcaatattctgttgacgtgactttcgatacttccctgcaa |
75 |
Q |
| |
|
|||||||||||||||||| |||| || ||||| | ||||||||| ||||| || ||||| || ||||||||||| |
|
|
| T |
24146915 |
ttcaaggcttcctcctttactttttcagtcttatccaatattctattgacatggctttcaatgcttccctgcaa |
24146842 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 27730339 - 27730412
Alignment:
| Q |
2 |
ttcaaggcttcctcctttgctttctctgtcttctgcaatattctgttgacgtgactttcgatacttccctgcaa |
75 |
Q |
| |
|
|||||||||||||||||| |||| || ||||| | |||||||| |||||| || ||||| || ||||||||||| |
|
|
| T |
27730339 |
ttcaaggcttcctcctttactttttcagtcttttccaatattcggttgacatggctttcaatgcttccctgcaa |
27730412 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 293
Target Start/End: Complemental strand, 24146665 - 24146599
Alignment:
| Q |
227 |
gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttct |
293 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||| |||||| |||| ||| ||||| ||| ||||| |
|
|
| T |
24146665 |
gaactagacatttcatacctttcgtactctctacgcagagactgcaactttgatttctgagctttct |
24146599 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 227 - 301
Target Start/End: Complemental strand, 29303658 - 29303584
Alignment:
| Q |
227 |
gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctgctcct |
301 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||| |||||| ||||| ||| ||||| ||| ||||||| ||||| |
|
|
| T |
29303658 |
gaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatttctgagctttctctactcct |
29303584 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 194
Target Start/End: Complemental strand, 29303830 - 29303709
Alignment:
| Q |
73 |
caaggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccata |
172 |
Q |
| |
|
||||||||| |||| ||| ||||| |||||||||||||||||||||| ||||||| ||| | | |||| ||||||||||||||||| |||| | |
|
|
| T |
29303830 |
caaggtatcggtatcatgggactccaatatcgtagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatcttga |
29303731 |
T |
 |
| Q |
173 |
atattttctccatacacgctca |
194 |
Q |
| |
|
|||| |||||||||||| |||| |
|
|
| T |
29303730 |
atatcttctccatacactctca |
29303709 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 29303916 - 29303843
Alignment:
| Q |
2 |
ttcaaggcttcctcctttgctttctctgtcttctgcaatattctgttgacgtgactttcgatacttccctgcaa |
75 |
Q |
| |
|
|||||||||||||||||| |||| || ||||||| |||||||| |||||| || ||||| || ||||||||||| |
|
|
| T |
29303916 |
ttcaaggcttcctcctttactttttcagtcttctccaatattcggttgacatggctttcaatgcttccctgcaa |
29303843 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 227 - 301
Target Start/End: Original strand, 12529384 - 12529458
Alignment:
| Q |
227 |
gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctgctcct |
301 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||| |||||| ||||| ||| ||||| ||| ||||||| ||||| |
|
|
| T |
12529384 |
gaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatttctgagctttctctactcct |
12529458 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 227 - 301
Target Start/End: Complemental strand, 35841638 - 35841564
Alignment:
| Q |
227 |
gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctgctcct |
301 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||| |||||| ||||| ||| ||||| ||| ||||||| ||||| |
|
|
| T |
35841638 |
gaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatttctgagctttctctactcct |
35841564 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 194
Target Start/End: Original strand, 12529212 - 12529333
Alignment:
| Q |
73 |
caaggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccata |
172 |
Q |
| |
|
||||||||| |||| ||| ||||| |||||||||||||||||||||| ||||||| ||| | | |||| ||||||||||||||||| |||| | |
|
|
| T |
12529212 |
caaggtatcggtatcatgggactccaatatcgtagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatcttga |
12529311 |
T |
 |
| Q |
173 |
atattttctccatacacgctca |
194 |
Q |
| |
|
|||| |||||||||||| |||| |
|
|
| T |
12529312 |
atatcttctccatacactctca |
12529333 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 194
Target Start/End: Complemental strand, 35841810 - 35841689
Alignment:
| Q |
73 |
caaggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccata |
172 |
Q |
| |
|
|||||||||| |||| ||| ||||| |||| ||||||||||||||||| ||||||| ||| | | |||| ||||||||||||||||| |||| | |
|
|
| T |
35841810 |
caaggtatcagtatcatgggactccaatatcatagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatcttga |
35841711 |
T |
 |
| Q |
173 |
atattttctccatacacgctca |
194 |
Q |
| |
|
|||| |||||||||||| |||| |
|
|
| T |
35841710 |
atatcttctccatacactctca |
35841689 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 35841896 - 35841823
Alignment:
| Q |
2 |
ttcaaggcttcctcctttgctttctctgtcttctgcaatattctgttgacgtgactttcgatacttccctgcaa |
75 |
Q |
| |
|
|||||||||||||||||| |||| || ||||||| |||||||| |||||| || ||||| || ||||||||||| |
|
|
| T |
35841896 |
ttcaaggcttcctcctttactttttcagtcttctccaatattcggttgacatggctttcaatgcttccctgcaa |
35841823 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 12529126 - 12529199
Alignment:
| Q |
2 |
ttcaaggcttcctcctttgctttctctgtcttctgcaatattctgttgacgtgactttcgatacttccctgcaa |
75 |
Q |
| |
|
|||||||||||||||||| |||| || || |||| |||||||| |||||| || ||||| || ||||||||||| |
|
|
| T |
12529126 |
ttcaaggcttcctcctttactttttcagtattctccaatattcggttgacatggctttcaatgcttccctgcaa |
12529199 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 227 - 301
Target Start/End: Original strand, 29282638 - 29282712
Alignment:
| Q |
227 |
gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctgctcct |
301 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||| |||||| ||||| ||| ||||| ||| ||||||| ||||| |
|
|
| T |
29282638 |
gaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatttctgagctttctctactcct |
29282712 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 227 - 301
Target Start/End: Original strand, 49220633 - 49220707
Alignment:
| Q |
227 |
gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctgctcct |
301 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||| |||||| ||||| ||| ||||| ||| ||||||| ||||| |
|
|
| T |
49220633 |
gaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatttctgagctttctctactcct |
49220707 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 29282380 - 29282453
Alignment:
| Q |
2 |
ttcaaggcttcctcctttgctttctctgtcttctgcaatattctgttgacgtgactttcgatacttccctgcaa |
75 |
Q |
| |
|
|||||||||||||||||| |||| || ||||||| |||||||| |||||| || ||||| || ||||||||||| |
|
|
| T |
29282380 |
ttcaaggcttcctcctttactttttcagtcttctccaatattcggttgacatggctttcaatgcttccctgcaa |
29282453 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 194
Target Start/End: Original strand, 29282466 - 29282587
Alignment:
| Q |
73 |
caaggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccata |
172 |
Q |
| |
|
||||||||| |||| ||| ||||| |||||||||||||||||||||| ||||||| ||| | | |||| ||||||||||||||||| |||| | |
|
|
| T |
29282466 |
caaggtatcggtatcatgggactccaatatcgtagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatcttga |
29282565 |
T |
 |
| Q |
173 |
atattttctccatacacgctca |
194 |
Q |
| |
|
|||| |||||||||||| |||| |
|
|
| T |
29282566 |
atatcttctccatacactctca |
29282587 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University