View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21583_low_1 (Length: 613)
Name: NF21583_low_1
Description: NF21583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21583_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 424; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Complemental strand, 43768487 - 43768040
Alignment:
| Q |
1 |
ttctcacataaattgaataaagaaaacaaaatcatataggtccaaattatgttccatacattatgtaacaaaaatggaaacaaattagaatttgaattgc |
100 |
Q |
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| T |
43768487 |
ttctcacataaattgaataaagaaaacaaaatcatataggtccaaattatgctccatacattatgtaacaaaaatggaaacaaattagaatttgaactgc |
43768388 |
T |
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| Q |
101 |
tgctattacatactttgcaatgtccatttgacttatcctcaataatgcaaccagatgggcgttttctgcatttcactaaggacttgtcaatgttgtcttc |
200 |
Q |
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| T |
43768387 |
tgctattacatactttgcaatgtccatttgacttatcctcaataatgcaaccagatgggcgttttctgcatttcactaaggacttgtcaatgttgtcttc |
43768288 |
T |
|
| Q |
201 |
tactttgtctatggacacatcaacaatagcccatttttcaccactcaaccgtttgcagtatctgacaaaatacacttctctagttggaaccattggtgtt |
300 |
Q |
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| T |
43768287 |
tactttgtctatggacacatcaacaatagcccatttttcaccactcaaccgtttgcagtatctgacaaaatacacttctctagttggaaccattggtgtt |
43768188 |
T |
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| Q |
301 |
aacatttgcaactcagcaaacatctgtacgtgccaaatgcaaaattaaggttagagttttatgattgatttcatgtccaagttaagtagtatatgctctg |
400 |
Q |
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| T |
43768187 |
aacatttgcaactcagcaaacatctgtacgtaccaaatgcaaaattaaggttagagttttatgattgatttcatgtccaagttaagtagtatatgctctg |
43768088 |
T |
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| Q |
401 |
tgcctccacagtatttatca-ttcgaaaactgtgcaatatgtccacat |
447 |
Q |
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| T |
43768087 |
tgcctccacagtatttatcatttggaaaactgtgcaatatgtccacat |
43768040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 442 - 597
Target Start/End: Original strand, 43768877 - 43769032
Alignment:
| Q |
442 |
ccacattggccggaagaaaaagcattttgaagttggcacaaagaatgacatggagtttctgtcaagcaattagtgcttcaagcttccatacatggactaa |
541 |
Q |
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| T |
43768877 |
ccacattggccggaagaaaaagcattttgaagttggcacaaagaatgacatggagtttctgtcaagcaattagtgcttcaagcttccatacatggactaa |
43768976 |
T |
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| Q |
542 |
ggttacaagtaaaactggagaagacataaggattagctctagaaagaacttgaatg |
597 |
Q |
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| T |
43768977 |
ggttacaagtaaaactggagaagacataaggattagctctagaaagaacttgaatg |
43769032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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