View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21583_low_11 (Length: 236)
Name: NF21583_low_11
Description: NF21583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21583_low_11 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 10 - 236
Target Start/End: Complemental strand, 36362386 - 36362160
Alignment:
| Q |
10 |
acatcatcaataagggcatcacgagcagtaacaatcaatgcatgaggagcaaatatcaatgcatcaaacgtagtataatcaacccattccttcaacttct |
109 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36362386 |
acatcagcaataagggcatcacgagcagtaacaatcaatgcatgaggagcaaatatcaatgcatcaaacgtagtataatcaacccattccttcaacttct |
36362287 |
T |
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| Q |
110 |
gttccttctcccagttttcaggtatcttaacctttcccttcatctcttccctatgcctcttcaacctctcacgccccgtaatttcttctaccctagcagt |
209 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36362286 |
gttccttctcccagttttcaggtaccttaacctttcccttcatctcttccctatgcctcttcaacctctcacgccccgtaatttcttctaccctagcagt |
36362187 |
T |
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| Q |
210 |
accattctctttattctcttcctcttt |
236 |
Q |
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||||||||||||||||||||||||||| |
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| T |
36362186 |
accattctctttattctcttcctcttt |
36362160 |
T |
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