View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21583_low_5 (Length: 381)
Name: NF21583_low_5
Description: NF21583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21583_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 43408858 - 43409216
Alignment:
| Q |
1 |
cgagataatggaagtgttggcttcagtgtgcaagacgcacaatttaccattagcactaacatgggctccttgcctacaacaacaacaaggaggaggaaag |
100 |
Q |
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| T |
43408858 |
cgagataatggaagtgttggcgtcagtgtgcaagacgcacaatttaccattagcactaacatgggctccttgcctacaacaacaacaaggaggaggaaag |
43408957 |
T |
|
| Q |
101 |
ggaagtagtggtgcatcaggttgtggtgtttcaactatgagttgctgcatatcaacggttgattcagcttgttatgttggtgacatggatgtattgggat |
200 |
Q |
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| T |
43408958 |
ggaagtagtggtgcatcaggttgtggtgtttcaactatgagttgctgcatatcaacggttgattcagcttgttatgttggtgacatggatgtattgggat |
43409057 |
T |
|
| Q |
201 |
tccaagaagcgtgcagtgagtatcacctttttaatggacaaggaatagtaggaacagccttcacaacaaccaaaccttgttttgctattgatattactgc |
300 |
Q |
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| T |
43409058 |
tccaagaagcgtgcagtgagtatcacctttttaatggacaaggaatagtaggaacagccttcacaacaaccaaaccttgttttgctattgatattactgc |
43409157 |
T |
|
| Q |
301 |
cttcagcaaatctgaatatccacttgctcaccatgccaacatgtttggcttacacgctg |
359 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43409158 |
cttcagcaaatctgaatatccacttgctcaccatgccaacatgtttggcttacacgctg |
43409216 |
T |
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