View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21583_low_6 (Length: 340)
Name: NF21583_low_6
Description: NF21583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21583_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 2906107 - 2905786
Alignment:
| Q |
1 |
gaacattagtctagataaagtgaaattccgttgtaaatgtcttaatggattgaatgcacatggtgatatgtatatgatattggagtctaatacacacaag |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2906107 |
gaacactagtctagataaagtgaaattccgttgtaaatgtcttaatggattgaatgcacatggtgatatgtatatgatattggagtctaatacacacaag |
2906008 |
T |
|
| Q |
101 |
tgatgatgatgtacattagttgaattgatgcatacatgctacatattcagggcaagtagtaattttcaccatggtcatattgtaagagttggnnnnnnnn |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2906007 |
tgatgatgatgtacattagttgaattgatgcatacatgctacatattcagggcaagtagtaattttcaccatggtcatattgtaagagttggtttttatt |
2905908 |
T |
|
| Q |
201 |
nnnnnnnnataggcaaatgttagcagtaaattttgttaggaggaggaaaaaatttattaaccgtagagatcgaactttgaacctttttcataccattcgg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2905907 |
tttcttttataggcaaatgttagcagtaaattttgttaggaggaggaaaaaatttattaaccgtagagatcgaattttgaacctttttcataccattcgg |
2905808 |
T |
|
| Q |
301 |
ctacacgctcagagactattgt |
322 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
2905807 |
ctacacgctcagagactattgt |
2905786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 2854079 - 2853760
Alignment:
| Q |
1 |
gaacattagtctagataaagtgaaattccgttgtaaatgtcttaatggattgaatgcacatggtgatatgtatatgatattggagtctaatacacacaag |
100 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2854079 |
gaacactagtctagataaagtgaaattccgttgtaaatgtcttaatggattgaatgcacatggtgatatgtatatgatattggagtctaatacacacaag |
2853980 |
T |
|
| Q |
101 |
tgatgatgatgtacattagttgaattgatgcatacatgctacatattcagggcaagtagtaattttcaccatggtcatattgtaagagttggnnnnnnnn |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2853979 |
tgatgatgatgtacattagttgaattgatgcataaatgctacatattcagggcaagtagtaattttcaccatggtcatattgtaagagttagtttttatt |
2853880 |
T |
|
| Q |
201 |
nnnnnnnnataggcaaatgttagcagtaaattttgttaggaggaggaaaaaatttattaaccgtagagatcgaactttgaacctttttcataccattcgg |
300 |
Q |
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||||||||||||| | |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2853879 |
tttcttttataggcaaatgttggtagtaaattttgttaggaggaggaaaaaa--aattaaccatagagatcgaactttgaacctttttcataccattcgg |
2853782 |
T |
|
| Q |
301 |
ctacacgctcagagactattgt |
322 |
Q |
| |
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||||||| | ||||||||||| |
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|
| T |
2853781 |
ctacacgtttggagactattgt |
2853760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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