View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21583_low_8 (Length: 304)

Name: NF21583_low_8
Description: NF21583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21583_low_8
NF21583_low_8
[»] chr8 (3 HSPs)
chr8 (1-301)||(11402055-11402355)
chr8 (94-189)||(11403127-11403222)
chr8 (1-65)||(11403018-11403082)
[»] chr2 (6 HSPs)
chr2 (73-194)||(42300562-42300683)
chr2 (2-75)||(42913239-42913312)
chr2 (73-194)||(42913325-42913446)
chr2 (227-301)||(42913497-42913571)
chr2 (2-75)||(42300696-42300769)
chr2 (227-301)||(42300437-42300511)
[»] chr4 (7 HSPs)
chr4 (73-194)||(27730425-27730546)
chr4 (2-194)||(45965976-45966183)
chr4 (227-301)||(27730597-27730671)
chr4 (227-301)||(45965851-45965925)
chr4 (2-75)||(24146842-24146915)
chr4 (2-75)||(27730339-27730412)
chr4 (227-293)||(24146599-24146665)
[»] chr6 (3 HSPs)
chr6 (227-301)||(29303584-29303658)
chr6 (73-194)||(29303709-29303830)
chr6 (2-75)||(29303843-29303916)
[»] chr5 (6 HSPs)
chr5 (227-301)||(12529384-12529458)
chr5 (227-301)||(35841564-35841638)
chr5 (73-194)||(12529212-12529333)
chr5 (73-194)||(35841689-35841810)
chr5 (2-75)||(35841823-35841896)
chr5 (2-75)||(12529126-12529199)
[»] chr1 (4 HSPs)
chr1 (227-301)||(29282638-29282712)
chr1 (227-301)||(49220633-49220707)
chr1 (2-75)||(29282380-29282453)
chr1 (73-194)||(29282466-29282587)


Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 11402355 - 11402055
Alignment:
1 tttcaaggcttcctcctttgctttctctgtcttctgcaatattctgttgacgtgactttcgatacttccctgcaaggtatcaatatcgtggagctccatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
11402355 tttcaaggcttcctcctttgctttctctgtcttctgcaatattctgttgatgtgacttttgatacttccctgcaaggtatcaatatcgtggagctccatt 11402256  T
101 atcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccataatattttctccatacacgctcaaatttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
11402255 atcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccataatattttctccatacacgctcaaatttt 11402156  T
201 gtaacgggagaaaaatattgttccatgaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctgctcc 300  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
11402155 gtaacaggagaaaaatattgttccatgaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctactcc 11402056  T
301 t 301  Q
    |    
11402055 t 11402055  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 94 - 189
Target Start/End: Original strand, 11403127 - 11403222
Alignment:
94 ctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccataatattttctccatacac 189  Q
    ||||||||||||||||||||||||| |||  || ||| ||||| |   |||| ||||||||||||||||| |||||  ||||| ||||||||||||    
11403127 ctccattatcgtagtcaccacatgaccaaactttatcgacatagtgtgtagaattttctccaccaccttgctatccggaatatcttctccatacac 11403222  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 11403018 - 11403082
Alignment:
1 tttcaaggcttcctcctttgctttctctgtcttctgcaatattctgttgacgtgactttcgatac 65  Q
    ||||| ||||||||||||| |||| || ||||||| ||||||| ||||||| |||||||||||||    
11403018 tttcatggcttcctcctttactttttcagtcttctccaatattttgttgacatgactttcgatac 11403082  T

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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 73 - 194
Target Start/End: Complemental strand, 42300683 - 42300562
Alignment:
73 caaggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccata 172  Q
    |||||||||  ||||||||  ||||| ||||||||||||||||||||||  |||||||  |||  | |||||| ||||||||||||||||| ||||   |    
42300683 caaggtatcggtatcgtgggactccaatatcgtagtcaccacatgatcatatttcatcggcatggtgcatagaattttctccaccaccttgctatcttga 42300584  T
173 atattttctccatacacgctca 194  Q
    |||| |||||||||||| ||||    
42300583 atatcttctccatacactctca 42300562  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 42913239 - 42913312
Alignment:
2 ttcaaggcttcctcctttgctttctctgtcttctgcaatattctgttgacgtgactttcgatacttccctgcaa 75  Q
    |||||||||||||||||| |||| || ||||||| |||||||| |||||| || ||||| || |||||||||||    
42913239 ttcaaggcttcctcctttactttttcagtcttctccaatattcggttgacatggctttcaatgcttccctgcaa 42913312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 194
Target Start/End: Original strand, 42913325 - 42913446
Alignment:
73 caaggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccata 172  Q
    |||||||||  |||| |||  ||||| ||||||||||||||||||||||  |||||||  |||  | | |||| ||||||||||||||||| ||||   |    
42913325 caaggtatcggtatcatgggactccaatatcgtagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatcttga 42913424  T
173 atattttctccatacacgctca 194  Q
    |||| |||||||||||| ||||    
42913425 atatcttctccatacactctca 42913446  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 301
Target Start/End: Original strand, 42913497 - 42913571
Alignment:
227 gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctgctcct 301  Q
    ||||| |||||||||||||||||||| ||||||| |||||| ||||  ||| ||||| ||| ||||||| |||||    
42913497 gaactggacatttcatacctttcgtattctctacgcagagactgcaactttgatttctgagctttctctactcct 42913571  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 42300769 - 42300696
Alignment:
2 ttcaaggcttcctcctttgctttctctgtcttctgcaatattctgttgacgtgactttcgatacttccctgcaa 75  Q
    |||||||||||||||||| | || ||  |||||| ||||||||||||||| || ||||| || |||||||||||    
42300769 ttcaaggcttcctcctttacattttcactcttctccaatattctgttgacatggctttcaatgcttccctgcaa 42300696  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 301
Target Start/End: Complemental strand, 42300511 - 42300437
Alignment:
227 gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctgctcct 301  Q
    ||||| |||||||||||||||||||| ||||||| |||||| ||||  ||| |||||  || ||||||| |||||    
42300511 gaactggacatttcatacctttcgtattctctacgcagagactgcaactttgatttctaagctttctctactcct 42300437  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 73 - 194
Target Start/End: Original strand, 27730425 - 27730546
Alignment:
73 caaggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccata 172  Q
    |||||||||| |||| |||  ||||| ||||||||||||||||||||||  |||||||  |||  | | |||| ||||||||||||||||| ||||   |    
27730425 caaggtatcagtatcatgggactccaatatcgtagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatcttga 27730524  T
173 atattttctccatacacgctca 194  Q
    |||| |||||||||||| ||||    
27730525 atatcttctccatacactctca 27730546  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 194
Target Start/End: Complemental strand, 45966183 - 45965976
Alignment:
2 ttcaaggcttcctcctttgctttctctgtcttctgcaatattctgttgacgtgactttcgatacttccctg---------------caaggtatcaatat 86  Q
    |||||||||||||||||| |||| || ||||||| |||||||| |||||| || ||||| || ||||||||               ||||||||| ||||    
45966183 ttcaaggcttcctcctttactttttcagtcttctccaatattcggttgacatggctttcaatgcttccctgcaactctgctaccgacaaggtatcgatat 45966084  T
87 cgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccataatattttctccata 186  Q
    | |||  ||||| ||||||||||||||||||||||  |||||||  |||  | | |||| ||||||||||||||||| ||||   ||||| |||||||||    
45966083 catgggactccaatatcgtagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatcttgaatatcttctccata 45965984  T
187 cacgctca 194  Q
    ||| ||||    
45965983 cactctca 45965976  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 227 - 301
Target Start/End: Original strand, 27730597 - 27730671
Alignment:
227 gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctgctcct 301  Q
    ||||| |||||||||||||||||||| ||||||| |||||| ||||| ||| ||||| ||| ||||||| |||||    
27730597 gaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatttctgagctttctctactcct 27730671  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 227 - 301
Target Start/End: Complemental strand, 45965925 - 45965851
Alignment:
227 gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctgctcct 301  Q
    ||||| |||||||||||||||||||| ||||||| |||||| ||||| ||| ||||| ||| ||||||| |||||    
45965925 gaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatttctgagctttctctactcct 45965851  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 24146915 - 24146842
Alignment:
2 ttcaaggcttcctcctttgctttctctgtcttctgcaatattctgttgacgtgactttcgatacttccctgcaa 75  Q
    |||||||||||||||||| |||| || ||||| | ||||||||| ||||| || ||||| || |||||||||||    
24146915 ttcaaggcttcctcctttactttttcagtcttatccaatattctattgacatggctttcaatgcttccctgcaa 24146842  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 27730339 - 27730412
Alignment:
2 ttcaaggcttcctcctttgctttctctgtcttctgcaatattctgttgacgtgactttcgatacttccctgcaa 75  Q
    |||||||||||||||||| |||| || ||||| | |||||||| |||||| || ||||| || |||||||||||    
27730339 ttcaaggcttcctcctttactttttcagtcttttccaatattcggttgacatggctttcaatgcttccctgcaa 27730412  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 293
Target Start/End: Complemental strand, 24146665 - 24146599
Alignment:
227 gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttct 293  Q
    ||||| |||||||||||||||||||| ||||||| |||||| ||||  ||| ||||| ||| |||||    
24146665 gaactagacatttcatacctttcgtactctctacgcagagactgcaactttgatttctgagctttct 24146599  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 227 - 301
Target Start/End: Complemental strand, 29303658 - 29303584
Alignment:
227 gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctgctcct 301  Q
    ||||| |||||||||||||||||||| ||||||| |||||| ||||| ||| ||||| ||| ||||||| |||||    
29303658 gaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatttctgagctttctctactcct 29303584  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 194
Target Start/End: Complemental strand, 29303830 - 29303709
Alignment:
73 caaggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccata 172  Q
    |||||||||  |||| |||  ||||| ||||||||||||||||||||||  |||||||  |||  | | |||| ||||||||||||||||| ||||   |    
29303830 caaggtatcggtatcatgggactccaatatcgtagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatcttga 29303731  T
173 atattttctccatacacgctca 194  Q
    |||| |||||||||||| ||||    
29303730 atatcttctccatacactctca 29303709  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 29303916 - 29303843
Alignment:
2 ttcaaggcttcctcctttgctttctctgtcttctgcaatattctgttgacgtgactttcgatacttccctgcaa 75  Q
    |||||||||||||||||| |||| || ||||||| |||||||| |||||| || ||||| || |||||||||||    
29303916 ttcaaggcttcctcctttactttttcagtcttctccaatattcggttgacatggctttcaatgcttccctgcaa 29303843  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 227 - 301
Target Start/End: Original strand, 12529384 - 12529458
Alignment:
227 gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctgctcct 301  Q
    ||||| |||||||||||||||||||| ||||||| |||||| ||||| ||| ||||| ||| ||||||| |||||    
12529384 gaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatttctgagctttctctactcct 12529458  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 227 - 301
Target Start/End: Complemental strand, 35841638 - 35841564
Alignment:
227 gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctgctcct 301  Q
    ||||| |||||||||||||||||||| ||||||| |||||| ||||| ||| ||||| ||| ||||||| |||||    
35841638 gaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatttctgagctttctctactcct 35841564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 194
Target Start/End: Original strand, 12529212 - 12529333
Alignment:
73 caaggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccata 172  Q
    |||||||||  |||| |||  ||||| ||||||||||||||||||||||  |||||||  |||  | | |||| ||||||||||||||||| ||||   |    
12529212 caaggtatcggtatcatgggactccaatatcgtagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatcttga 12529311  T
173 atattttctccatacacgctca 194  Q
    |||| |||||||||||| ||||    
12529312 atatcttctccatacactctca 12529333  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 194
Target Start/End: Complemental strand, 35841810 - 35841689
Alignment:
73 caaggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccata 172  Q
    |||||||||| |||| |||  ||||| |||| |||||||||||||||||  |||||||  |||  | | |||| ||||||||||||||||| ||||   |    
35841810 caaggtatcagtatcatgggactccaatatcatagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatcttga 35841711  T
173 atattttctccatacacgctca 194  Q
    |||| |||||||||||| ||||    
35841710 atatcttctccatacactctca 35841689  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 35841896 - 35841823
Alignment:
2 ttcaaggcttcctcctttgctttctctgtcttctgcaatattctgttgacgtgactttcgatacttccctgcaa 75  Q
    |||||||||||||||||| |||| || ||||||| |||||||| |||||| || ||||| || |||||||||||    
35841896 ttcaaggcttcctcctttactttttcagtcttctccaatattcggttgacatggctttcaatgcttccctgcaa 35841823  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 12529126 - 12529199
Alignment:
2 ttcaaggcttcctcctttgctttctctgtcttctgcaatattctgttgacgtgactttcgatacttccctgcaa 75  Q
    |||||||||||||||||| |||| || || |||| |||||||| |||||| || ||||| || |||||||||||    
12529126 ttcaaggcttcctcctttactttttcagtattctccaatattcggttgacatggctttcaatgcttccctgcaa 12529199  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 227 - 301
Target Start/End: Original strand, 29282638 - 29282712
Alignment:
227 gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctgctcct 301  Q
    ||||| |||||||||||||||||||| ||||||| |||||| ||||| ||| ||||| ||| ||||||| |||||    
29282638 gaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatttctgagctttctctactcct 29282712  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 227 - 301
Target Start/End: Original strand, 49220633 - 49220707
Alignment:
227 gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctgctcct 301  Q
    ||||| |||||||||||||||||||| ||||||| |||||| ||||| ||| ||||| ||| ||||||| |||||    
49220633 gaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatttctgagctttctctactcct 49220707  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 29282380 - 29282453
Alignment:
2 ttcaaggcttcctcctttgctttctctgtcttctgcaatattctgttgacgtgactttcgatacttccctgcaa 75  Q
    |||||||||||||||||| |||| || ||||||| |||||||| |||||| || ||||| || |||||||||||    
29282380 ttcaaggcttcctcctttactttttcagtcttctccaatattcggttgacatggctttcaatgcttccctgcaa 29282453  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 194
Target Start/End: Original strand, 29282466 - 29282587
Alignment:
73 caaggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccata 172  Q
    |||||||||  |||| |||  ||||| ||||||||||||||||||||||  |||||||  |||  | | |||| ||||||||||||||||| ||||   |    
29282466 caaggtatcggtatcatgggactccaatatcgtagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatcttga 29282565  T
173 atattttctccatacacgctca 194  Q
    |||| |||||||||||| ||||    
29282566 atatcttctccatacactctca 29282587  T

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