View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21584_high_10 (Length: 246)
Name: NF21584_high_10
Description: NF21584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21584_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 53515010 - 53514783
Alignment:
| Q |
1 |
catataattgtacctgtaatgtctgtaagcataggctaggctcatggaaaattaaattatatgacgatagaggtttttcatggtggttagtgataaaaga |
100 |
Q |
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| T |
53515010 |
catataattgtacctgtaatgtctgtaagcataggctaggctcatggaaaattaaattatatgacaatagaggtttttcatggtggttagtgataaaaga |
53514911 |
T |
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| Q |
101 |
aaatctagtattcacattcatacacgaaatattcagattgcaggaaacttaaactttccgaaagactccagagtttgaatggagatctttctttttatan |
200 |
Q |
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| T |
53514910 |
aaatctagtattcacattcatacacgaaatattcagattgcaggaaacttaaactttccgaaagactccagagtttgagtggagatctttctttttatat |
53514811 |
T |
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| Q |
201 |
nnnnnnnaaatgagagagatcttaaact |
228 |
Q |
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||||||||||||||||||||| |
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| T |
53514810 |
tttttttaaatgagagagatcttaaact |
53514783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 53511309 - 53511121
Alignment:
| Q |
1 |
catataattgtacctgtaatgtctgtaagcataggctaggctcatggaaaattaaattatatgacgatagaggtttttcatggtggttagtgataaaaga |
100 |
Q |
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|||| ||||| || |||||||||||||||||||||||||| ||||||||||||||| |||| | ||||||||||||||||||| |||| |||||||||| |
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| T |
53511309 |
catacaattgcacttgtaatgtctgtaagcataggctagggtcatggaaaattaaactatacaaagatagaggtttttcatggtagttaatgataaaaga |
53511210 |
T |
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| Q |
101 |
aaatctagtattcacattcatacacgaaatattcagattgcaggaaacttaaactttccgaaagactccagagtttgaatggagatctt |
189 |
Q |
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| T |
53511209 |
aaatctagtattcatattcatacatggaatattcagattgcaggaaacttgaactttctgaaagactccagagtttgagtggagatctt |
53511121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 88
Target Start/End: Complemental strand, 53549078 - 53548992
Alignment:
| Q |
2 |
atataattgtacctgtaatgtctgtaagcataggctaggctcatggaaaattaaattatatgacgatagaggtttttcatggtggtt |
88 |
Q |
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||||||||| || ||||| ||||||||||||||||||||||||||||||| |||||| ||||| |||||||||| ||| ||||||| |
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| T |
53549078 |
atataattgcacttgtaaagtctgtaagcataggctaggctcatggaaaactaaattgtatgaagatagaggttgttctgggtggtt |
53548992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 155
Target Start/End: Complemental strand, 53525469 - 53525323
Alignment:
| Q |
2 |
atataattgtacctgtaatgtctgtaagcataggctaggctcatggaaaattaaattatatgacgatagaggtttttcatggtggttagtgataaaagaa |
101 |
Q |
| |
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|||||||| || |||||||| |||||||||||||||||||||||| |||||||||| || || |||||||| ||||| |||||||| | ||||||||| |
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| T |
53525469 |
atataattccacttgtaatgt-tgtaagcataggctaggctcatgggaaattaaattgtacgaagatagagggttttctgggtggttaat-ataaaagaa |
53525372 |
T |
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| Q |
102 |
aatctagtattcacattcatacacgaaatattcagattgcaggaaacttaaact |
155 |
Q |
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||||||| ||||||||| | |||||||||||||||| |||||| |||| |
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| T |
53525371 |
aatctag-----gtattcatacatggaatattcagattgcagtaaacttgaact |
53525323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 20197573 - 20197525
Alignment:
| Q |
15 |
tgtaatgtctgtaagcataggctaggctcatggaaaattaaattatatga |
64 |
Q |
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|||||||| ||||||||||||||| |||||||||||||||| |||||||| |
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| T |
20197573 |
tgtaatgt-tgtaagcataggctatgctcatggaaaattaagttatatga |
20197525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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