View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21584_high_12 (Length: 239)
Name: NF21584_high_12
Description: NF21584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21584_high_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 48254993 - 48255212
Alignment:
| Q |
1 |
attaaaagaaaatagtatgttaatatattaacgaaggaaattaaaaggactaaacttagatgcagtagcagacgtaattttcgaaccattttaaaattgt |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
48254993 |
attaaaagaaattagtatgttaatatattaacgaaggaaattaaaagga-taaacttagatgcagtaccagacgtaattttcaaaccattttaaaattgt |
48255091 |
T |
|
| Q |
101 |
tagtgccagttataagagtagaaagtttgtgcattatgtaccttgttgatcagcttctttaactttggttgcaaattgtttcatttggttgagctgaata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
48255092 |
tagtgccagttataagagtagaaagtttgtgcattatgtaccttgttgatcagcttctttaactttggttgcaaattgtttcatttgggtgagctgaata |
48255191 |
T |
|
| Q |
201 |
gcaagggagaaagggctgatc |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
48255192 |
gcaagggagaaagggctgatc |
48255212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University