View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21584_high_6 (Length: 343)
Name: NF21584_high_6
Description: NF21584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21584_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 13 - 298
Target Start/End: Complemental strand, 33521446 - 33521157
Alignment:
| Q |
13 |
cattgtttatcgacactataccagggaagtagattatttctattgacaagagatactgaaatcaagatcgttgaataaacgatagatgataggatttttc |
112 |
Q |
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| T |
33521446 |
cattatttatcgacactataccagggaagtagattatttctattgacaagagatactgaaatcaagatcgttgaataaacgatagatgataggatttttc |
33521347 |
T |
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| Q |
113 |
aaataagaaataggagagaagaaagtttttctttggttacaggagagaagaaagattaaggataatatttgaaacacgtgaaagaaca----ttaaagnn |
208 |
Q |
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| T |
33521346 |
atataagaaataggagagaagaaagtttttctttggttacaggagagaagaaagattaaggataatatttgaaacacgtgaaagaacattaattaaagaa |
33521247 |
T |
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| Q |
209 |
nnnnnggttaaaattacataaccaatcctttaactaattaagagattttatgtctttcctataattaatttttgtttaattttggtccct |
298 |
Q |
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| T |
33521246 |
aaaaaaggttaaattacataacctatcctttaactaattaagagattttatgtctgtcctataattaatttttgcttcattttggtccct |
33521157 |
T |
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