View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21584_high_8 (Length: 288)
Name: NF21584_high_8
Description: NF21584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21584_high_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 107 - 281
Target Start/End: Original strand, 56059579 - 56059757
Alignment:
| Q |
107 |
attaatgaaggttttagtaaggacaatatacaattattgtaaa-tatttacggtacctggtattggccatgcatttgaatgatgatta---ttaggtcca |
202 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
56059579 |
attaatgaaggttttagcaaggacaatatacaattattgtaaaatatttacggtacctggtattggccatgcatttgaatgatgattattattaggtcca |
56059678 |
T |
|
| Q |
203 |
tcacaatgaagtgagccagtaatgaggacagttgatagcttctcctctccatatccagcaatttccacaacttcttctc |
281 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56059679 |
tcacaatgaagtgagccagtaatgagtacagttgatagcttctcctctccatatccagcaatttccacaacttcttctc |
56059757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 56059347 - 56059439
Alignment:
| Q |
1 |
ttgttgttttcagaagtagaaatttcaccaaaatatgaaagc--------aataaactgtcaccaaacaatggaacaacaacttcttctgtac |
85 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56059347 |
ttgttgttttcagaagtagaaatttcaccaaaatatgaaagcaatataataatatactgtcaccaaacaatggaacaacaacttcttctgtac |
56059439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University