View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21584_low_13 (Length: 240)
Name: NF21584_low_13
Description: NF21584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21584_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 56059357 - 56059144
Alignment:
| Q |
1 |
gaaaacaacaaaagttgcattcaacattatattatcgatcagctgtcgtccttgataactgaaaaagaaagctggccaacatagaaaattttaatgacaa |
100 |
Q |
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|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56059357 |
gaaaacaacaaatgttgcattcaacattat-----cgatcagctgtcgtccttgataactgaaaaagaaagctggccaacatagaaaattttaatgacaa |
56059263 |
T |
|
| Q |
101 |
tgattcccaaccttcccgtcaaatgcataactaagctatatggggaagcaaagcaatatatataaatcacgttatgtaatgaaagtttacaacaacaata |
200 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56059262 |
tgattcccaaccttcccgtcaaatgcatagctaagctatatggggaa-----gcaatatatataaatcacgttatgtaatgaaagtttacaacaacaata |
56059168 |
T |
|
| Q |
201 |
tgcgtgcactactttacttatata |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
56059167 |
tgcgtgcactactttacttatata |
56059144 |
T |
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