View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21584_low_15 (Length: 204)

Name: NF21584_low_15
Description: NF21584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21584_low_15
NF21584_low_15
[»] chr3 (7 HSPs)
chr3 (9-184)||(49582595-49582770)
chr3 (16-130)||(38183115-38183229)
chr3 (16-130)||(17731076-17731190)
chr3 (16-130)||(19032307-19032421)
chr3 (16-130)||(3371404-3371522)
chr3 (16-126)||(1026795-1026905)
chr3 (97-129)||(3372378-3372410)
[»] chr5 (6 HSPs)
chr5 (16-130)||(41341036-41341150)
chr5 (16-130)||(35429915-35430029)
chr5 (19-130)||(7400477-7400588)
chr5 (57-130)||(35428332-35428406)
chr5 (61-130)||(18009237-18009307)
chr5 (84-130)||(30921629-30921676)
[»] chr8 (3 HSPs)
chr8 (49-181)||(7278017-7278144)
chr8 (16-130)||(392318-392432)
chr8 (57-130)||(7284614-7284688)
[»] chr7 (6 HSPs)
chr7 (16-130)||(5448871-5448985)
chr7 (60-130)||(5439861-5439932)
chr7 (57-130)||(5438868-5438942)
chr7 (56-181)||(15588619-15588739)
chr7 (57-130)||(5447878-5447952)
chr7 (16-127)||(15589801-15589912)
[»] chr6 (6 HSPs)
chr6 (16-179)||(32342081-32342238)
chr6 (16-130)||(14766415-14766529)
chr6 (16-130)||(21118721-21118835)
chr6 (57-130)||(14763838-14763912)
chr6 (16-130)||(21118439-21118553)
chr6 (50-135)||(20727510-20727596)
[»] chr1 (5 HSPs)
chr1 (16-130)||(6139814-6139928)
chr1 (57-130)||(6138233-6138307)
chr1 (16-130)||(52022122-52022236)
chr1 (50-131)||(43834986-43835068)
chr1 (16-181)||(5397343-5397497)
[»] chr4 (4 HSPs)
chr4 (21-130)||(14508729-14508838)
chr4 (16-129)||(31322572-31322685)
chr4 (50-130)||(10550026-10550107)
chr4 (56-181)||(41848309-41848429)
[»] chr2 (3 HSPs)
chr2 (16-178)||(20594615-20594771)
chr2 (16-130)||(4660118-4660231)
chr2 (78-130)||(31073691-31073744)


Alignment Details
Target: chr3 (Bit Score: 168; Significance: 3e-90; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 9 - 184
Target Start/End: Original strand, 49582595 - 49582770
Alignment:
Q  9 agtgagatgaagcaaggggaagaccaaggttagatataaagacctaagttctttgtttttagatgcattagtcagtagcactttaacttatatctaactt 108  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49582595 agtgtgatgaagcaaggggaagaccaatgttagatataaagacctaagttctttgtttttagatgcattagtcagtagcactttaacttatatctaactt 49582694  T
Q  109 agtttaaatatttgctttgtgattgtgatagtgtggttgtaccggagcattggagtgagagtgagagaagtctttg 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49582695 agtttaaatatttgctttgtgattgtgatagtgtggttgtaccggagcattggagtgagagtgagagaagtctttg 49582770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 16 - 130
Target Start/End: Complemental strand, 38183229 - 38183115
Alignment:
Q  16 tgaagcaaggggaagaccaaggttagatataaagacctaagttctttgtttttagatgcattagtcagtagcactttaa-cttatatctaacttagttta 114  Q
    |||||||||| ||||||||||| || ||||  | | |||  |||||||||||||||||||  ||||||||||||||||| ||||||||| |||||| |||    
T  38183229 tgaagcaaggtgaagaccaaggctatatattga-atctagtttctttgtttttagatgcaccagtcagtagcactttaagcttatatctgacttaggtta 38183131  T
Q  115 aatatttgctttgtga 130  Q
    ||||||||||||||||    
T  38183130 aatatttgctttgtga 38183115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 130
Target Start/End: Complemental strand, 17731190 - 17731076
Alignment:
Q  16 tgaagcaaggggaagaccaaggttagatataaagacctaagttctttgtttttagatgcattagtcagtagcactttaa-cttatatctaacttagttta 114  Q
    ||||||||||||||| |||||| || ||||  | |||||  |||||| || |||||||||  ||||||||||||||||| ||||||||| ||||||||||    
T  17731190 tgaagcaaggggaaggccaaggctatatattga-acctagtttctttattgttagatgcaccagtcagtagcactttaagcttatatctgacttagttta 17731092  T
Q  115 aatatttgctttgtga 130  Q
    ||||||| ||||||||    
T  17731091 aatattttctttgtga 17731076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 130
Target Start/End: Complemental strand, 19032421 - 19032307
Alignment:
Q  16 tgaagcaaggggaagaccaaggttagatataaagacctaagttctttgtttttagatgcattagtcagtagcactttaa-cttatatctaacttagttta 114  Q
    ||||||||||||||| |||||| || ||||  | |||||  |||||| || |||||||||  ||||||||||||||||| ||||||||| ||||||||||    
T  19032421 tgaagcaaggggaaggccaaggctatatattga-acctagtttctttattgttagatgcaccagtcagtagcactttaagcttatatctgacttagttta 19032323  T
Q  115 aatatttgctttgtga 130  Q
    ||||||| ||||||||    
T  19032322 aatattttctttgtga 19032307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 130
Target Start/End: Original strand, 3371404 - 3371522
Alignment:
Q  16 tgaagcaaggggaagaccaaggttagatataaagacctaagttctttgtttttagatgcattagtcagtagcacttta-----acttatatctaacttag 110  Q
    |||||||| ||||||||||||| || |||| || ||||| |||| |||||||||||||||| ||||| ||| ||||||     | |||||||| |||||     
T  3371404 tgaagcaaagggaagaccaaggctatatattaa-acctaggttccttgtttttagatgcatcagtcaatagaactttaaacttatttatatctgacttaa 3371502  T
Q  111 tttaaatatttgctttgtga 130  Q
    ||||||||||||||||||||    
T  3371503 tttaaatatttgctttgtga 3371522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 126
Target Start/End: Original strand, 1026795 - 1026905
Alignment:
Q  16 tgaagcaaggggaagaccaaggttagatataaagacctaagttctttgtttttagatgcattagtcagtagcactttaa-cttatatctaacttagttta 114  Q
    |||||||||||||| ||||||| || ||||  | || || ||||||||||||||||||||  ||||| ||| ||| ||| |||||||||  ||| |||||    
T  1026795 tgaagcaaggggaataccaaggctatatatcga-acgtaggttctttgtttttagatgcaccagtcaatagtactataagcttatatctgtctttgttta 1026893  T
Q  115 aatatttgcttt 126  Q
    ||||||| ||||    
T  1026894 aatattttcttt 1026905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 129
Target Start/End: Original strand, 3372378 - 3372410
Alignment:
Q  97 tatatctaacttagtttaaatatttgctttgtg 129  Q
    ||||||| |||||||||||||||||||||||||    
T  3372378 tatatctgacttagtttaaatatttgctttgtg 3372410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 3e-28; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 16 - 130
Target Start/End: Original strand, 41341036 - 41341150
Alignment:
Q  16 tgaagcaaggggaagaccaaggttagatataaagacctaagttctttgtttttagatgcattagtcagtagcactttaa-cttatatctaacttagttta 114  Q
    |||||||||||||||||||| |||| |||| || |||||  |||||||||||||||||||  ||||||||||||||||| ||||||||| ||||||||||    
T  41341036 tgaagcaaggggaagaccaaagttatatattaa-acctagtttctttgtttttagatgcaccagtcagtagcactttaagcttatatctgacttagttta 41341134  T
Q  115 aatatttgctttgtga 130  Q
    ||| ||||||||||||    
T  41341135 aatgtttgctttgtga 41341150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 130
Target Start/End: Complemental strand, 35430029 - 35429915
Alignment:
Q  16 tgaagcaaggggaagaccaaggttagatataaagacctaagttctttgtttttagatgcattagtcagtagcactttaa-cttatatctaacttagttta 114  Q
    |||||||||||||||||||||  || ||||  | |||||  ||||||||||||||| |||  ||||||||||||||||| ||||||||| ||||||||||    
T  35430029 tgaagcaaggggaagaccaagactatatattga-acctagtttctttgtttttagaagcaccagtcagtagcactttaagcttatatctgacttagttta 35429931  T
Q  115 aatatttgctttgtga 130  Q
    ||||||||||||||||    
T  35429930 aatatttgctttgtga 35429915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 19 - 130
Target Start/End: Complemental strand, 7400588 - 7400477
Alignment:
Q  19 agcaaggggaagaccaaggttagatataaagacctaagttctttgtttttagatgcattagtcagtagcactttaa-cttatatctaacttagtttaaat 117  Q
    ||||||||||||||||||  || ||||  | ||||| ||||||||||||||||||||   |||||||||||||||| ||||||||| |||||||||||||    
T  7400588 agcaaggggaagaccaagactatatattga-acctaggttctttgtttttagatgcaccggtcagtagcactttaagcttatatctgacttagtttaaat 7400490  T
Q  118 atttgctttgtga 130  Q
    ||||| |||||||    
T  7400489 atttgttttgtga 7400477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 57 - 130
Target Start/End: Complemental strand, 35428406 - 35428332
Alignment:
Q  57 ttctttgtttttagatgcattagtcagtagcactttaa-cttatatctaacttagtttaaatatttgctttgtga 130  Q
    |||||||||||||||||||  ||||||||||||||||| ||||||||| |||||||||||||||||| |||||||    
T  35428406 ttctttgtttttagatgcaccagtcagtagcactttaagcttatatctgacttagtttaaatatttgttttgtga 35428332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 61 - 130
Target Start/End: Original strand, 18009237 - 18009307
Alignment:
Q  61 ttgtttttagatgcattagtcagtagcactttaa-cttatatctaacttagtttaaatatttgctttgtga 130  Q
    ||||||||| |||||  ||||||||||||||||| ||||||| | ||||||||||||||||| ||||||||    
T  18009237 ttgtttttaaatgcaccagtcagtagcactttaaacttatatttgacttagtttaaatattttctttgtga 18009307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 84 - 130
Target Start/End: Complemental strand, 30921676 - 30921629
Alignment:
Q  84 tagcactttaa-cttatatctaacttagtttaaatatttgctttgtga 130  Q
    ||||||||||| ||||||||||| |||||||||||| |||||||||||    
T  30921676 tagcactttaaacttatatctaagttagtttaaataattgctttgtga 30921629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 1e-27; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 49 - 181
Target Start/End: Complemental strand, 7278144 - 7278017
Alignment:
Q  49 gacctaagttctttgtttttagatgcattagtcagtagcactttaa-cttatatctaacttagtttaaatatttgctttgtgattgtgatagtgtggttg 147  Q
    |||||| ||||||||||| ||||||||  ||||||||||||||||| ||||||||| ||||||||||||||||||||||      |||| ||| || |||    
T  7278144 gacctaggttctttgtttgtagatgcaccagtcagtagcactttaagcttatatctgacttagtttaaatatttgcttt------gtgagagtatgattg 7278051  T
Q  148 taccggagcattggagtgagagtgagagaagtct 181  Q
    ||| |||||||||| |||||||||||||||||||    
T  7278050 tactggagcattggggtgagagtgagagaagtct 7278017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 130
Target Start/End: Complemental strand, 392432 - 392318
Alignment:
Q  16 tgaagcaaggggaagaccaaggttagatataaagacctaagttctttgtttttagatgcattagtcagtagcactttaa-cttatatctaacttagttta 114  Q
    |||||||||||||||||||||| || ||||  | || ||  |||||||||||||||| ||| ||| ||||||||||||| ||||||||| ||||||||||    
T  392432 tgaagcaaggggaagaccaaggctatatattga-acgtagtttctttgtttttagatacatcagttagtagcactttaagcttatatctgacttagttta 392334  T
Q  115 aatatttgctttgtga 130  Q
    ||||||||||||||||    
T  392333 aatatttgctttgtga 392318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 57 - 130
Target Start/End: Complemental strand, 7284688 - 7284614
Alignment:
Q  57 ttctttgtttttagatgcattagtcagtagcactttaa-cttatatctaacttagtttaaatatttgctttgtga 130  Q
    ||||||||||||||| |||  | | |||| |||||||| ||||||||| |||||||||||||||||| |||||||    
T  7284688 ttctttgtttttagacgcaccaattagtaccactttaaacttatatctgacttagtttaaatatttgttttgtga 7284614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 130
Target Start/End: Complemental strand, 5448985 - 5448871
Alignment:
Q  16 tgaagcaaggggaagaccaaggttagatataaagacctaagttctttgtttttagatgcattagtcagtagcactttaa-cttatatctaacttagttta 114  Q
    |||||||||||||| ||||| | || ||||  | |||||  |||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||    
T  5448985 tgaagcaaggggaataccaatgctatatattga-acctagtttctttgtttttagatgcaccagtcagtagcactttaagcttatatctaacttagttta 5448887  T
Q  115 aatatttgctttgtga 130  Q
    ||||||| ||||||||    
T  5448886 aatattttctttgtga 5448871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 60 - 130
Target Start/End: Complemental strand, 5439932 - 5439861
Alignment:
Q  60 tttgtttttagatgcattagtcagtagcactttaa-cttatatctaacttagtttaaatatttgctttgtga 130  Q
    ||||||||||||||||  ||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||    
T  5439932 tttgtttttagatgcaccagtcagtagcactttaagcttatatctaactcagtttaaatattttctttgtga 5439861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 57 - 130
Target Start/End: Complemental strand, 5438942 - 5438868
Alignment:
Q  57 ttctttgtttttagatgcattagtcagtagcactttaa-cttatatctaacttagtttaaatatttgctttgtga 130  Q
    |||||||||||||||||||  ||||| ||||||||||| ||||||| |||||||||||||||||||| |||||||    
T  5438942 ttctttgtttttagatgcaccagtcaatagcactttaagcttatatataacttagtttaaatatttgttttgtga 5438868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 56 - 181
Target Start/End: Complemental strand, 15588739 - 15588619
Alignment:
Q  56 gttctttgtttttagatgcattagtcagtagcactttaa-cttatatctaacttagtttaaatatttgctttgtgattgtgatagtgtggttgtaccgga 154  Q
    ||||||||||||||||||||   ||||||||||| |||| ||||||| | |||||||||||||||||| |      |||||| ||| ||||||||| ||     
T  15588739 gttctttgtttttagatgcacctgtcagtagcacgttaagcttatatttgacttagtttaaatatttgtt------ttgtgagagtttggttgtactggg 15588646  T
Q  155 gcattggagtgagagtgagagaagtct 181  Q
    ||||||| || ||||||||||||||||    
T  15588645 gcattggggtaagagtgagagaagtct 15588619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 130
Target Start/End: Complemental strand, 5447952 - 5447878
Alignment:
Q  57 ttctttgtttttagatgcattagtcagtagcactttaa-cttatatctaacttagtttaaatatttgctttgtga 130  Q
    ||||||||| |||||||||  ||||| ||||||||||| ||||||| |||||||||||||||||||| |||||||    
T  5447952 ttctttgttcttagatgcaccagtcaatagcactttaagcttatatataacttagtttaaatatttgttttgtga 5447878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 15589912 - 15589801
Alignment:
Q  16 tgaagcaaggggaagaccaaggttagatataaagacctaagttctttgtttttagatgcattagtcagtagcactttaa-cttatatctaacttagttta 114  Q
    |||||||||||||||||||||| || ||||  | | ||| ||||||||| ||||||||||   ||||||||||| |||| ||||||||| |||||| ||     
T  15589912 tgaagcaaggggaagaccaaggctatatattga-atctaggttctttgtatttagatgcacaggtcagtagcacattaagcttatatcttacttaggttc 15589814  T
Q  115 aatatttgctttg 127  Q
    |||||||||||||    
T  15589813 aatatttgctttg 15589801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 3e-22; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 16 - 179
Target Start/End: Original strand, 32342081 - 32342238
Alignment:
Q  16 tgaagcaaggggaagaccaaggttagatataaagacctaagttctttgtttttagatgcattagtcagtagcactttaa-cttatatctaacttagttta 114  Q
    |||||||| ||||||||||||| || ||||  | |  |||||||||||||||||||||||   ||||||| |||||||| ||||||||| ||||||||||    
T  32342081 tgaagcaaagggaagaccaaggctatatattga-atataagttctttgtttttagatgcaccggtcagtaacactttaagcttatatctgacttagttta 32342179  T
Q  115 aatatttgctttgtgattgtgatagtgtggttgtaccggagcattggagtgagagtgagagaagt 179  Q
    |||||||| |      |||||| ||||||||||||| || ||||| | |||||||||||||||||    
T  32342180 aatatttgtt------ttgtgagagtgtggttgtactggggcattcgggtgagagtgagagaagt 32342238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 130
Target Start/End: Complemental strand, 14766529 - 14766415
Alignment:
Q  16 tgaagcaaggggaagaccaaggttagatataaagacctaagttctttgtttttagatgcattagtcagtagcactttaa-cttatatctaacttagttta 114  Q
    |||||||||| ||||||||||| || ||||  | |||||  || |||||||||||||||| |||||| ||||||||||| ||| ||||| ||||||||||    
T  14766529 tgaagcaaggagaagaccaaggctatatattga-acctagtttttttgtttttagatgcactagtcaatagcactttaagcttgtatctgacttagttta 14766431  T
Q  115 aatatttgctttgtga 130  Q
    ||||||||| ||||||    
T  14766430 aatatttgcattgtga 14766415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 130
Target Start/End: Complemental strand, 21118835 - 21118721
Alignment:
Q  16 tgaagcaaggggaagaccaaggttagatataaagacctaagttctttgtttttagatgcattagtcagtagcactttaa-cttatatctaacttagttta 114  Q
    ||||||||| ||||| |||||| || ||||  | |||||  |||||||||||||||||||  ||||||||||||||||| ||||||||| ||||||||||    
T  21118835 tgaagcaagaggaaggccaaggctatatattga-acctagtttctttgtttttagatgcaccagtcagtagcactttaagcttatatctgacttagttta 21118737  T
Q  115 aatatttgctttgtga 130  Q
    |||||| | |||||||    
T  21118736 aatattagttttgtga 21118721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 57 - 130
Target Start/End: Complemental strand, 14763912 - 14763838
Alignment:
Q  57 ttctttgtttttagatgcattagtcagtagcactttaa-cttatatctaacttagtttaaatatttgctttgtga 130  Q
    ||||||||||||||||| |  ||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||    
T  14763912 ttctttgtttttagatgtaccagtcagtagcactttaagcttgtatctgacttagtttaaatatttgctttgtga 14763838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 130
Target Start/End: Complemental strand, 21118553 - 21118439
Alignment:
Q  16 tgaagcaaggggaagaccaaggttagatataaagacctaagttctttgtttttagatgcattagtcagtagcactttaa-cttatatctaacttagttta 114  Q
    ||||||||| ||||| |||||| || ||||  | |||||  |||||||||||||||||||  ||||| ||||||||||| ||||||||| ||||||||||    
T  21118553 tgaagcaagaggaaggccaaggctatatattga-acctagtttctttgtttttagatgcaccagtcaatagcactttaagcttatatctgacttagttta 21118455  T
Q  115 aatatttgctttgtga 130  Q
    |||||| | |||||||    
T  21118454 aatattagttttgtga 21118439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 135
Target Start/End: Original strand, 20727510 - 20727596
Alignment:
Q  50 acctaagttctttgtttttagatgcattagtcagtagcacttta-acttatatctaacttagtttaaatatttgctttgtgattgtg 135  Q
    ||||| |||||||||||||||||||| || ||| ||||||||||  ||||||||| |||||| |||||||||| |||||||| ||||    
T  20727510 acctatgttctttgtttttagatgcactaatcaatagcactttatgcttatatctgacttagattaaatattttctttgtgagtgtg 20727596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 5e-21; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 16 - 130
Target Start/End: Original strand, 6139814 - 6139928
Alignment:
Q  16 tgaagcaaggggaagaccaaggttagatataaagacctaagttctttgtttttagatgcattagtcagtagcactttaa-cttatatctaacttagttta 114  Q
    |||||||||||||||||||||| || ||||  | || ||  |||||||||||||||||||   |||| || |||||||| ||||||||||||||||||||    
T  6139814 tgaagcaaggggaagaccaaggctatatattga-acatagtttctttgtttttagatgcaccggtcaataacactttaagcttatatctaacttagttta 6139912  T
Q  115 aatatttgctttgtga 130  Q
    ||||||||||||||||    
T  6139913 aatatttgctttgtga 6139928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 57 - 130
Target Start/End: Original strand, 6138233 - 6138307
Alignment:
Q  57 ttctttgtttttagatgcattagtcagtagcactttaa-cttatatctaacttagtttaaatatttgctttgtga 130  Q
    |||||||||||| ||||||  ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  6138233 ttctttgttttttgatgcaccagtcagtagcactttaagcttatatctgacttagtttaaatatttgctttgtga 6138307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 130
Target Start/End: Original strand, 52022122 - 52022236
Alignment:
Q  16 tgaagcaaggggaagaccaaggttagatataaagacctaagttctttgtttttagatgcattagtcagtagcactttaa-cttatatctaacttagttta 114  Q
    ||||| |||||||||||||||| || ||||  | |||||  |||||||||||||||||||  ||||| ||||||||||| || |||||| ||||||||||    
T  52022122 tgaagtaaggggaagaccaaggctatatattga-acctagtttctttgtttttagatgcaccagtcattagcactttaagctcatatctgacttagttta 52022220  T
Q  115 aatatttgctttgtga 130  Q
    |||||||| |||||||    
T  52022221 aatatttgttttgtga 52022236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 50 - 131
Target Start/End: Original strand, 43834986 - 43835068
Alignment:
Q  50 acctaagttctttgtttttagatgcattagtcagtagcacttt-aacttatatctaacttagtttaaatatttgctttgtgat 131  Q
    |||||||||||| ||||| |||||||| ||||||||||||||| |||||| |||| |||| ||||||||||||| ||||||||    
T  43834986 acctaagttcttagttttaagatgcatcagtcagtagcactttaaacttacatctgacttggtttaaatatttgttttgtgat 43835068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 181
Target Start/End: Original strand, 5397343 - 5397497
Alignment:
Q  16 tgaagcaaggggaagaccaaggttagatataaagacctaagttctttgtttttagatgcattagtcagtagcactttaa-cttatatctaacttagttta 114  Q
    |||||||| ||||||||||||| || |||| | |||||| ||||||||||||||||||||       ||| |||||||| ||||||||||||||| ||||    
T  5397343 tgaagcaaagggaagaccaaggctatatatta-gacctaggttctttgtttttagatgca------cgtaacactttaagcttatatctaacttaattta 5397435  T
Q  115 aatatttgctttgtgattgtgatagtgtggttgtaccggagcatt-ggagtgagagtgagagaagtct 181  Q
    |||||||  |      |||||| |||||||||| |||||  |||| || |||||||||||||||||||    
T  5397436 aatatttatt------ttgtgagagtgtggttgcaccgggacattgggcgtgagagtgagagaagtct 5397497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 21 - 130
Target Start/End: Original strand, 14508729 - 14508838
Alignment:
Q  21 caaggggaagaccaaggttagatataaagacctaagttctttgtttttagatgcattagtcagtagcactttaa-cttatatctaacttagtttaaatat 119  Q
    ||||||||||||||||| || ||||  | ||||| |||||| ||||||||||| |  ||||||||||||||||| ||||||||| || ||||||||||||    
T  14508729 caaggggaagaccaaggctatatattga-acctaggttcttagtttttagatgtaccagtcagtagcactttaagcttatatctgacctagtttaaatat 14508827  T
Q  120 ttgctttgtga 130  Q
    |||||||||||    
T  14508828 ttgctttgtga 14508838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 31322572 - 31322685
Alignment:
Q  16 tgaagcaaggggaagaccaaggttagatataaagacctaagttctttgtttttagatgcattagtcagtagcactttaa-cttatatctaacttagttta 114  Q
    ||||| ||| ||||||||||||||| ||||   |||||| ||||||||||||||||||||  | ||| | ||||||||| ||||||||| ||||||||||    
T  31322572 tgaagtaagaggaagaccaaggttatatattg-gacctaggttctttgtttttagatgcaccattcaatggcactttaagcttatatctgacttagttta 31322670  T
Q  115 aatatttgctttgtg 129  Q
    ||||||| |||||||    
T  31322671 aatattttctttgtg 31322685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 130
Target Start/End: Complemental strand, 10550107 - 10550026
Alignment:
Q  50 acctaagttctttgtttttagatgcattagtcagtagcactttaa-cttatatctaacttagtttaaatatttgctttgtga 130  Q
    ||||| ||||||||||||||||||||  |||||||||||||||||  |||||||| ||| |||||||||||||| |||||||    
T  10550107 acctaggttctttgtttttagatgcaccagtcagtagcactttaagtttatatctgactcagtttaaatatttgttttgtga 10550026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 56 - 181
Target Start/End: Complemental strand, 41848429 - 41848309
Alignment:
Q  56 gttctttgtttttagatgcattagtcagtagca-ctttaacttatatctaacttagtttaaatatttgctttgtgattgtgatagtgtggttgtaccgga 154  Q
    ||||||||||||||||||||| |||||||||||  |||| ||||||||| | |||||||||||||||| |      || ||| ||||||||||||| |||    
T  41848429 gttctttgtttttagatgcatcagtcagtagcatttttagcttatatctgatttagtttaaatatttgtt------ttatgaaagtgtggttgtactgga 41848336  T
Q  155 gcattggagtgagagtgagagaagtct 181  Q
     |||||| |  ||||||||||||||||    
T  41848335 acattggggctagagtgagagaagtct 41848309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 178
Target Start/End: Original strand, 20594615 - 20594771
Alignment:
Q  16 tgaagcaaggggaagaccaaggttagatataaagacctaagttctttgtttttagatgcattagtcagtagcactttaa-cttatatctaacttagttta 114  Q
    |||||||||||||||||||||  || ||||  | ||||| ||||||| ||||||||||||   |||| || |||| ||| ||||||||| || |||||||    
T  20594615 tgaagcaaggggaagaccaagactatatattga-acctaggttctttatttttagatgcaccggtcaataacactctaagcttatatctgacatagttta 20594713  T
Q  115 aatatttgctttgtgattgtgatagtgtggttgtaccggagcattggagtgagagtgagagaag 178  Q
    |||||||| |      |||||| ||||||||||||| |||| ||||| |||||| |||||||||    
T  20594714 aatatttgtt------ttgtgagagtgtggttgtactggaggattggggtgagaatgagagaag 20594771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 16 - 130
Target Start/End: Complemental strand, 4660231 - 4660118
Alignment:
Q  16 tgaagcaaggggaagaccaaggttagatataaagacctaagttctttgtttttagatgcattagtcagtagcactttaac-ttatatctaacttagttta 114  Q
    |||||||||||||||||||| | || ||||  | |||||  |||||||||||| ||||||   ||||||||||||||||  |||||||| ||||||||||    
T  4660231 tgaagcaaggggaagaccaatgctatatattga-acctagtttctttgttttt-gatgcaccggtcagtagcactttaagattatatctgacttagttta 4660134  T
Q  115 aatatttgctttgtga 130  Q
    |||||||| |||||||    
T  4660133 aatatttggtttgtga 4660118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 130
Target Start/End: Complemental strand, 31073744 - 31073691
Alignment:
Q  78 agtcagtagcactttaa-cttatatctaacttagtttaaatatttgctttgtga 130  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||| |||||||    
T  31073744 agtcagtagcattttaaacttatatctaacttagtttaaatatttgttttgtga 31073691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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