View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21584_low_2 (Length: 512)
Name: NF21584_low_2
Description: NF21584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21584_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 7 - 353
Target Start/End: Complemental strand, 1364489 - 1364142
Alignment:
| Q |
7 |
cctcaaccaccagaaggaacaagaaggg-gaaaggggatctccttgtcgcagacctctagctaaagtaaatttctcagtgggactaccattcaataaaac |
105 |
Q |
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| T |
1364489 |
cctcaaccaccagaaggaacaagaaaggtgaaaggggatctccctgtcgcagacctctagctaaagtgaatttctcagtgggactaccattcaataaaac |
1364390 |
T |
|
| Q |
106 |
agccgcagtagcagtcccaacacattctttcattcatttcctccaaatagtcggaaacaacatcttaaccataacatcatccaaatatttccaatcaact |
205 |
Q |
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| T |
1364389 |
agtcgcagtagcagtcccaacacattttttcattcatttcctccaaatagtcggaaacaacatcgtaaccataatatcatccaaatatttccaatcaact |
1364290 |
T |
|
| Q |
206 |
gaattgtatgccttcttaaagtcgactttaaataaaagcaattcnnnnnnnnnnnnnnnagattcatcaactacctaattagcaaccagaataccatcta |
305 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
1364289 |
gaattgtatgctttcttaaagtcgactttaaataaaagcaattcttttttcaattttttagattcatcaactacctaattagcaaccagaataccatcta |
1364190 |
T |
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| Q |
306 |
aaatttgtcttcctttaataaatgctaaggacgcttttttgctttcct |
353 |
Q |
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|||||||| ||||||||||||||||||||| | ||||||||||||||| |
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| T |
1364189 |
aaatttgtattcctttaataaatgctaagggcacttttttgctttcct |
1364142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 363 - 490
Target Start/End: Complemental strand, 1364106 - 1363979
Alignment:
| Q |
363 |
ggacacttttttgctattgtgcacatgtcaaaataaatcaagtttttatggatgtattagtacagaaattcaaacattgaccgcggattagtaagaaacc |
462 |
Q |
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| T |
1364106 |
ggacacttttttgctattgtccacatgtcaaaacaaatcaagtttttatggatgtattagtacagaaattcaaacattgaccgcggattagtaagaaacc |
1364007 |
T |
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| Q |
463 |
aaacatcctctaattcgaacttaaaact |
490 |
Q |
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| T |
1364006 |
aaacatcccctaattcgaacataaaact |
1363979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 92 - 199
Target Start/End: Original strand, 17952062 - 17952169
Alignment:
| Q |
92 |
ccattcaataaaacagccgcagtagcagtcccaacacattctttcattcatttcctccaaatagtcggaaacaacatcttaaccataacatcatccaaat |
191 |
Q |
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||||||| || || ||||||| ||| || ||||||||||||||||| ||||||||||||| | ||||||||| ||| ||| | |||||| ||||||||| |
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| T |
17952062 |
ccattcactagaatagccgcaatagttgtgccaacacattctttcatccatttcctccaaagattcggaaacaccattttacctataacaccatccaaat |
17952161 |
T |
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| Q |
192 |
atttccaa |
199 |
Q |
| |
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|||||||| |
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| T |
17952162 |
atttccaa |
17952169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 119 - 221
Target Start/End: Original strand, 32808864 - 32808966
Alignment:
| Q |
119 |
gtcccaacacattctttcattcatttcctccaaatagtcggaaacaacatcttaaccataacatcatccaaatatttccaatcaactgaattgtatgcct |
218 |
Q |
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||||||| ||||||||| || || || | ||||| ||||||||| ||| || | |||||||||||||||||| ||||||||| ||| |||||||| | |
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| T |
32808864 |
gtcccaatacattcttttatccacttacgccaaagtgtcggaaaccccattttcaacataacatcatccaaatagctccaatcaattgagttgtatgctt |
32808963 |
T |
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| Q |
219 |
tct |
221 |
Q |
| |
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||| |
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| T |
32808964 |
tct |
32808966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 103 - 240
Target Start/End: Complemental strand, 15106505 - 15106368
Alignment:
| Q |
103 |
aacagccgcagtagcagtcccaacacattctttcattcatttcctccaaatagtcggaaacaacatcttaaccataacatcatccaaatatttccaatca |
202 |
Q |
| |
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|||||||||| |||| || ||||||||||||||||| |||||||||||| | ||||||| ||| || ||| | |||||||||| ||||| ||||| |
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| T |
15106505 |
aacagccgcattagccgtgccaacacattctttcatccatttcctccaatgattcggaaatggcatattgcccacaccatcatccaagtattttcaatct |
15106406 |
T |
|
| Q |
203 |
actgaattgtatgccttcttaaagtcgactttaaataa |
240 |
Q |
| |
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|| |||| ||||||||| | |||||| || |||||||| |
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| T |
15106405 |
acagaatcgtatgccttttcaaagtcaaccttaaataa |
15106368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 189
Target Start/End: Complemental strand, 20691226 - 20691162
Alignment:
| Q |
125 |
acacattctttcattcatttcctccaaatagtcggaaacaacatcttaaccataacatcatccaa |
189 |
Q |
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|||||||||||||| ||||||||||||| |||| |||| |||| ||| ||||||| |||||||| |
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| T |
20691226 |
acacattctttcatccatttcctccaaagagtcagaaatgacattttacccataacgtcatccaa |
20691162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 203
Target Start/End: Original strand, 21580459 - 21580552
Alignment:
| Q |
110 |
gcagtagcagtcccaacacattctttcattcatttcctccaaatagtcggaaacaacatcttaaccataacatcatccaaatatttccaatcaa |
203 |
Q |
| |
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|||| ||||||||||||||| || || || ||||| | ||| | |||||||||| |||||| | |||||| || |||||||| |||||||||| |
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| T |
21580459 |
gcagaagcagtcccaacacactccttaatccatttgcgccacaaagtcggaaaccccatcttcatcataacttcctccaaataattccaatcaa |
21580552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 209
Target Start/End: Complemental strand, 23877346 - 23877277
Alignment:
| Q |
140 |
catttcctccaaatagtcggaaacaacatcttaaccataacatcatccaaatatttccaatcaactgaat |
209 |
Q |
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||||||||||||| ||| ||||| |||| || |||| |||||||||||||||||||| ||||| |||| |
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| T |
23877346 |
catttcctccaaagagtgggaaaagacattttctccatcacatcatccaaatatttccattcaacggaat |
23877277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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