View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21584_low_5 (Length: 379)
Name: NF21584_low_5
Description: NF21584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21584_low_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 18 - 365
Target Start/End: Complemental strand, 16173616 - 16173267
Alignment:
| Q |
18 |
tgaagccaaaagtgtgcaagaacatcaaattgaaagatcacaaactttgaagcaaaacacaagtatatcaactagtttttcgaagaaacttggccgtcaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
16173616 |
tgaagccaaaagtgtgcaagaacatcaaattgaaagatcacaaactgtgaagcaaaacacaagtataaaaactagtttttcgaagaaacttggccgtcaa |
16173517 |
T |
|
| Q |
118 |
ggaaaaacacaaaagtataaaataacgactannnnnnn--caaatggctggttcatttcttgatttaaattataaatttaatgtacttcgtcttcggtag |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
16173516 |
ggaaaaacacaaaagtataaaataacgactatttttttttcaaatggctggttcatttcttgatttgaattataaatttaatgtacttcgtcttcggtag |
16173417 |
T |
|
| Q |
216 |
caggttcacttgactttctcttcttgcttgtattttttggacgatattcatggagtatgaatcgaataactccaagctttgagcggaatatttccttcga |
315 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16173416 |
caggttcacttgattttctcttcttgcttgtattttttggacgatattcatggagtatgaatcgaataactccaagctttgagcggaatatttccttcga |
16173317 |
T |
|
| Q |
316 |
aggtaaatgtgtagaatactgcataaattatacaaaatgttagttgtgat |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16173316 |
aggtaaatgtgtagaatactgcataaattatacaaaatgttagttgtgat |
16173267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 227 - 360
Target Start/End: Complemental strand, 20994977 - 20994844
Alignment:
| Q |
227 |
gactttctcttcttgcttgtattttttggacgatattcatggagtatgaatcgaataactccaagctttgagcggaatatttccttcgaaggtaaatgtg |
326 |
Q |
| |
|
|||||| ||| ||||||| | || ||||| || |||||||||||||||||||||| | | || |||||||||||||| ||| |||||||||| ||||| |
|
|
| T |
20994977 |
gactttatctccttgcttcttttgcttggaagagattcatggagtatgaatcgaatcagttcaggctttgagcggaatttttggttcgaaggtatatgtg |
20994878 |
T |
|
| Q |
327 |
tagaatactgcataaattatacaaaatgttagtt |
360 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||| |
|
|
| T |
20994877 |
tagaaaactgcataaattatacaaaattttagtt |
20994844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 338
Target Start/End: Complemental strand, 19413203 - 19413126
Alignment:
| Q |
261 |
attcatggagtatgaatcgaataactccaagctttgagcggaatatttccttcgaaggtaaatgtgtagaatactgca |
338 |
Q |
| |
|
||||||||||||| ||| |||| |||||||||||||| || ||| || ||||| |||| ||||||||||||||||| |
|
|
| T |
19413203 |
attcatggagtataaattgaatcactccaagctttgaacgaaattttctattcgatggtatatgtgtagaatactgca |
19413126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University