View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21584_low_6 (Length: 373)
Name: NF21584_low_6
Description: NF21584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21584_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 16 - 367
Target Start/End: Original strand, 53515066 - 53515417
Alignment:
| Q |
16 |
tctcttcaactgtcttatgtattctcatataaatttaggtttaaaatcggtgtcctctcatcctctcatattaattttcacttctactatcttatgtata |
115 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
53515066 |
tctcttcaactgtcttatgtattctcatataaagttaggtttaaaatcggtgtcctctcatactctcatattaattttcacttctactatcttatgtata |
53515165 |
T |
|
| Q |
116 |
ttctacaacagaccagaaaattgtgatacatggaagctcttggaacagatgacagaatttcagtccattgatccttcctttccgtcaaactgaaatgcat |
215 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53515166 |
ttctaaaacagaccagaaaattgtgatacatggaagctcttggaacagatgacagaatttcagtccattgatccttcctttccgtcaaactgaaatgcat |
53515265 |
T |
|
| Q |
216 |
tccggaggcaacaattacaagacttaaaagattatacacatttcaaatcaaaatcaaacagaataccactcactttatgatgttttcatccttcctttcc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53515266 |
tccggaggcaacaattacaagacttaaaagattatacacatttcaaatcaaaatcaaacagaataccactcactttatgatgttttcatccttcctttcc |
53515365 |
T |
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| Q |
316 |
gtcagtaatactaataagccggtctttctctcaaccttgttattcttctcac |
367 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53515366 |
gtcagtaatactaataagccggtctttctctcaaccttgttattcttctcac |
53515417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 16 - 312
Target Start/End: Original strand, 53525904 - 53526199
Alignment:
| Q |
16 |
tctcttcaactgtcttatgtattctcatataaatttaggtttaaaa-tcggtgtcctctcatcctctcatattaattttcacttctactatcttatgtat |
114 |
Q |
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||||||||||| |||||||||||||||| |||||||||||| |||| | | | |||| ||||||||||||||||||||| |||| ||||||||||||| |
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| T |
53525904 |
tctcttcaactatcttatgtattctcatctaaatttaggttcaaaaattgttttccttacatcctctcatattaattttctcttcaactatcttatgtaa |
53526003 |
T |
|
| Q |
115 |
attctacaacagaccagaaaattgtgatacatggaagctcttggaacagatgacagaatttcagtccattgatccttcctttccgtcaaactgaaatgca |
214 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||| | ||||| |||| ||||||||| |||||||||||||||| |||||||||| | |
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| T |
53526004 |
--tctaaaactgaccagaaaattgtgatacatggaagctcttggctccgatgaaagaacttcagtccactgatccttcctttccgacaaactgaaacaaa |
53526101 |
T |
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| Q |
215 |
ttccggaggcaacaattacaagacttaaaagattatacacatttcaaatcaaaatcaaacagaataccactcactttatgatgttttcatccttcctt |
312 |
Q |
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|||||| ||||||||| |||| || | ||||| || ||| ||||||||||||||||||| |||||| |||||||| || || |||||||||||||||| |
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| T |
53526102 |
ttccgggggcaacaatcacaaaacatgaaagaataaacatatttcaaatcaaaatcaaatagaatatcactcactctacgaagttttcatccttcctt |
53526199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 190 - 319
Target Start/End: Original strand, 53526541 - 53526670
Alignment:
| Q |
190 |
ttcctttccgtcaaactgaaatgcattccggaggcaacaattacaagacttaaaagattatacacatttcaaatcaaaatcaaacagaataccactcact |
289 |
Q |
| |
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||||||||||||||||||||| ||||| ||||||||||| |||| || | ||||| || |||||||||||||||||||||| |||||||||||||||| |
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| T |
53526541 |
ttcctttccgtcaaactgaaacaaattccagaggcaacaatcacaaaacatgaaagaataaacacatttcaaatcaaaatcaatcagaataccactcact |
53526640 |
T |
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| Q |
290 |
ttatgatgttttcatccttcctttccgtca |
319 |
Q |
| |
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||||| |||||||||||||| |||||||| |
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| T |
53526641 |
ctatgaagttttcatccttccgttccgtca |
53526670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 190 - 317
Target Start/End: Original strand, 53526306 - 53526433
Alignment:
| Q |
190 |
ttcctttccgtcaaactgaaatgcattccggaggcaacaattacaagacttaaaagattatacacatttcaaatcaaaatcaaacagaataccactcact |
289 |
Q |
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|
||||||||||||||||||||| ||||| ||||||||||| | || || | |||||||| ||||||||||||||||||||||||| ||||||||||||| |
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| T |
53526306 |
ttcctttccgtcaaactgaaacagattccagaggcaacaatcaaaaaacatgaaagattaaacacatttcaaatcaaaatcaaacaaaataccactcact |
53526405 |
T |
|
| Q |
290 |
ttatgatgttttcatccttcctttccgt |
317 |
Q |
| |
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|||| ||||||||||||||||||||| |
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| T |
53526406 |
ctatgtagttttcatccttcctttccgt |
53526433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 186 - 319
Target Start/End: Original strand, 53526419 - 53526553
Alignment:
| Q |
186 |
atccttcctttccgtcaaactgaaatgcattccggaggcaacaattacaagacttaaaagattatacacatttcaaatcaaaatcaaacagaat-accac |
284 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||| |||||| || | |||| || |||||||| ||||||||||||||||||||||| ||||| ||||| |
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| T |
53526419 |
atccttcctttccgttaaactgaaatgaattccagaggcagcagtcacaaaacacgaaagattaaacacatttcaaatcaaaatcaaatagaataaccac |
53526518 |
T |
|
| Q |
285 |
tcactttatgatgttttcatccttcctttccgtca |
319 |
Q |
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||||| ||||| ||||| ||| ||||||||||||| |
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| T |
53526519 |
tcactctatgaagtttttatcattcctttccgtca |
53526553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 186 - 310
Target Start/End: Original strand, 53526654 - 53526778
Alignment:
| Q |
186 |
atccttcctttccgtcaaactgaaatgcattccggaggcaacaattacaagacttaaaagattatacacatttcaaatcaaaatcaaacagaataccact |
285 |
Q |
| |
|
|||||||| |||||||||||||||| | ||| ||| |||| |||| ||| | | |||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
53526654 |
atccttccgttccgtcaaactgaaacgaatttcgggggcagcaatcacacatcatgaaagattaaacacatttgaaatcaaaatcaaacagaataccact |
53526753 |
T |
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| Q |
286 |
cactttatgatgttttcatccttcc |
310 |
Q |
| |
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|||| ||||| ||||| |||||||| |
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| T |
53526754 |
cactctatgaagtttttatccttcc |
53526778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 242 - 319
Target Start/End: Original strand, 53526240 - 53526318
Alignment:
| Q |
242 |
aaagattatacacatttcaaatcaaaatcaaacagaat-accactcactttatgatgttttcatccttcctttccgtca |
319 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||| |||||||||| ||||| ||||| | | ||||||||||||| |
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| T |
53526240 |
aaagattaaacacatttcaaatcaaaatcaaacagaataaccactcactctatgaagtttttagcattcctttccgtca |
53526318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 280
Target Start/End: Original strand, 53550092 - 53550245
Alignment:
| Q |
127 |
accagaaaattgtgatacatggaagctcttggaacagatgacagaatttcagtccattgatccttcctttccgtcaaactgaaatgcattccggaggcaa |
226 |
Q |
| |
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|||| |||||||||||| | | |||||||||| | |||| |||||||||||||| || |||||| |||||| || ||||||| ||||| || ||| |
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| T |
53550092 |
accaaaaaattgtgatagacgaaagctcttggctcccatgaaagaatttcagtccactgctccttcttttccgccagactgaaaccaattccagaagcag |
53550191 |
T |
|
| Q |
227 |
caattacaagacttaaaagattatacacatttcaaatcaaaatcaaacagaata |
280 |
Q |
| |
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|| | |||| || | ||| |||| ||||||| ||||||| |||||||||||||| |
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| T |
53550192 |
cagtcacaaaacatgaaaaattaaacacattccaaatcagaatcaaacagaata |
53550245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 70 - 158
Target Start/End: Complemental strand, 16608062 - 16607976
Alignment:
| Q |
70 |
ctctcatcctctcatattaattttcacttctactatcttatgtatattctacaacagaccagaaaattgtgatacatggaagctcttgg |
158 |
Q |
| |
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|||| ||||| | |||||||||||| |||| ||||||||||| ||||||| ||| |||||||||| |||||| ||||| |||||||| |
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| T |
16608062 |
ctcttatcctttaatattaattttctcttccactatcttatg--tattctaaaaccaaccagaaaatggtgatagatggatgctcttgg |
16607976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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