View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21585_high_14 (Length: 423)
Name: NF21585_high_14
Description: NF21585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21585_high_14 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
| [»] scaffold0428 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 19 - 423
Target Start/End: Complemental strand, 895564 - 895160
Alignment:
| Q |
19 |
ccttcccctggactaagccatttaattccacaagttgaatttgccaaacaattacttcaacatcacaatgaattcattgtcacattcatcattccaacac |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
895564 |
ccttcccctggactaagccatttaattccacaagttgaatttgccaaacaattacttcaacatcacaatgaattcattgtcacattcatcattccaacac |
895465 |
T |
|
| Q |
119 |
tttgtcctcttactccttcaatgcaacaagtcttgaacaatcttccaccaaacatagacttcattcttcttcctcaagtaaaaaatattcaacaaagcca |
218 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
895464 |
tttctcctcttactccttcaatgcaacaagtcttgaacaatcttccaccaaacatagacttcattcttcttcctcaagtaaaaaatattcaacaaagcca |
895365 |
T |
|
| Q |
219 |
tgatcctgcagcacaaatgaaactcattgtgaaacattctattccatttcttcaacaagaagttaaatcactcatttccaaaacttaccttgtttcttta |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
895364 |
tgatcctgcagcacaaatgaaactcattgtgaaacattctattccatttcttcaacaagaagttaaatcactcatttccaaaactaaccttgtttcttta |
895265 |
T |
|
| Q |
319 |
atcttcagtatattttcaacagatgcatatgaagttgctaaacaattcaacttgtcttcttaccttttctatgcctcgggagctgttccaacatcatttc |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
895264 |
atcttcagtatattttcaacagatgcatatgaagttgccaaacaatttaacttgtcttcttaccttttctatgcctcaggagctgttccaacatcatttt |
895165 |
T |
|
| Q |
419 |
atctc |
423 |
Q |
| |
|
||||| |
|
|
| T |
895164 |
atctc |
895160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 19 - 398
Target Start/End: Original strand, 905076 - 905458
Alignment:
| Q |
19 |
ccttcccctggactaagccatttaattccacaagttgaatttgccaaacaattacttcaacatcacaatgaattcattgtcacattcatcattccaacac |
118 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
905076 |
ccttcccctggacttagccatttaattccacaagttgaatttgccaaacaattacttcaacaacacaatgaattcattgtcacattcatcattccaacac |
905175 |
T |
|
| Q |
119 |
tttgtcctcttactccttcaatgcaacaagtcttgaacaatcttccaccaaacatagacttcattcttcttcctcaagtaaaaaatattcaaca---aag |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||| ||||||||||||||||| | ||| | | | |
|
|
| T |
905176 |
tttgtcctcttactccttcaatgcaacaagtcttgaacactcttcccccaaacatagaattcattgttcttcctcaagtaaaacaccttccagagattaa |
905275 |
T |
|
| Q |
216 |
ccatgatcctgcagcacaaatgaaactcattgtgaaacattctattccatttcttcaacaagaagttaaatcactcatttccaaaacttaccttgtttct |
315 |
Q |
| |
|
| ||| |||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
905276 |
tcttgaacctgcaacacaaatgaaactcattgtgaaacattctattccatttctacaagaagaagtaaaatcactcatttccaaaactaaccttgtttct |
905375 |
T |
|
| Q |
316 |
ttaatcttcagtatattttcaacagatgcatatgaagttgctaaacaattcaacttgtcttcttaccttttctatgcctcggg |
398 |
Q |
| |
|
|||||||| || |||| ||||| |||||| |||||||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
905376 |
ttaatctttggtctattctcaaccgatgcacatgaagttgctaaacaattcaatttatcttcttaccttttctatgcctcggg |
905458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 94; Significance: 1e-45; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 19 - 405
Target Start/End: Complemental strand, 8295513 - 8295121
Alignment:
| Q |
19 |
ccttcccctggactaagccatttaattccacaagttgaatttgccaaacaattacttcaacatcacaatgaattcattgtcacattcatcattccaacac |
118 |
Q |
| |
|
||||| |||||| | |||||||| ||||||| |||||| ||||| |||| |||||| ||| |||||||||||| | | |||||||| ||||||| |||| |
|
|
| T |
8295513 |
ccttcacctggattgagccatttgattccactagttgagtttgctaaactattactccaaaatcacaatgaataccatatcacattcctcattcccacac |
8295414 |
T |
|
| Q |
119 |
tttgtcctcttactccttcaatgcaacaagtcttgaacaatcttccaccaaacatagacttcattcttcttcctcaagtaaaaaata------ttcaaca |
212 |
Q |
| |
|
|| |||| || |||||||| |||||| ||||||||| ||||||||||||||| |||||||| ||||||| ||||| || | | ||| ||| |
|
|
| T |
8295413 |
ttggtccactaactccttccatgcaatccatcttgaacactcttccaccaaacatgaacttcattgttcttccccaagtcaacattgaagaccttccaca |
8295314 |
T |
|
| Q |
213 |
aagccatgatcctgcagcacaaatgaaactcattgtgaaacattctattccatttcttcaacaagaagttaaatcactcatttccaaaacttaccttgtt |
312 |
Q |
| |
|
| | |||||||||| |||| ||||||||||| |||||||| ||||||||||||||| | ||||||| ||||||||| |||| |||||| ||| ||| |
|
|
| T |
8295313 |
taatcttgatcctgcaacacagatgaaactcatagtgaaacactctattccatttctttatgaagaagtaaaatcactcctttcaaaaactcgcctagtt |
8295214 |
T |
|
| Q |
313 |
tctttaatcttcagtatattttcaacagatgcatatgaagttgctaaacaattcaacttgtcttcttaccttttctatgcctcgggagctgtt |
405 |
Q |
| |
|
||||| | ||||| || |||||||| |||||| |||| ||||| ||||| |||||| | | || |||||||||| | |||| ||||||||| |
|
|
| T |
8295213 |
gctttagttttcagcatgttttcaaccgatgcacatgatgttgcgaaacatttcaaccttttatcataccttttcttttcctcaggagctgtt |
8295121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 19 - 405
Target Start/End: Original strand, 33256242 - 33256634
Alignment:
| Q |
19 |
ccttcccctggactaagccatttaattccacaagttgaatttgccaaacaattacttcaacatcacaatgaattcattgtcacattcatcattccaacac |
118 |
Q |
| |
|
||||| |||||| | |||||||| |||||||||||||| ||||| |||| |||||| |||||||||||||| | | | |||||||| ||||||| |||| |
|
|
| T |
33256242 |
ccttcacctggattgagccatttgattccacaagttgagtttgcaaaactattactccaacatcacaatgagtaccatatcacattcctcattcccacac |
33256341 |
T |
|
| Q |
119 |
tttgtcctcttactccttcaatgcaacaagtcttgaacaatcttccaccaaacatagacttcattcttcttcctcaagtaa------aaaatattcaaca |
212 |
Q |
| |
|
|| |||| || |||||||| |||||| | ||||||||| |||||||||||||| |||||| | ||||||| ||||| | || | ||| ||| |
|
|
| T |
33256342 |
ttggtccactaactccttccatgcaatcaatcttgaacacacttccaccaaacatgaacttcactgttcttccccaagtcaacattgaagaccttccaca |
33256441 |
T |
|
| Q |
213 |
aagccatgatcctgcagcacaaatgaaactcattgtgaaacattctattccatttcttcaacaagaagttaaatcactcatttccaaaacttaccttgtt |
312 |
Q |
| |
|
| | ||| ||| || |||||||||||||||| |||||||| ||||||||||||||||| ||||||| |||||||| |||| |||||| |||||||| |
|
|
| T |
33256442 |
taatcttgaaccttcaacacaaatgaaactcatagtgaaacactctattccatttcttcatgaagaagtaaaatcacttctttcaaaaactaaccttgtt |
33256541 |
T |
|
| Q |
313 |
tctttaatcttcagtatattttcaacagatgcatatgaagttgctaaacaattcaacttgtcttcttaccttttctatgcctcgggagctgtt |
405 |
Q |
| |
|
||||| | | ||| || |||||||| |||||| | || || |||||||| |||||| | | ||||||||||||| | | || ||||||||| |
|
|
| T |
33256542 |
gctttagtttgcagcatgttttcaaccgatgcacacgatgtagctaaacatttcaaccttttgtcttaccttttcttttcttcaggagctgtt |
33256634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 82 - 157
Target Start/End: Original strand, 6440492 - 6440567
Alignment:
| Q |
82 |
cacaatgaattcattgtcacattcatcattccaacactttgtcctcttactccttcaatgcaacaagtcttgaaca |
157 |
Q |
| |
|
|||||||| ||||||||||||||| || |||||||| || ||| ||| |||||||||||| | ||||| ||||||| |
|
|
| T |
6440492 |
cacaatgagttcattgtcacattcctcgttccaacatttggtcgtctcactccttcaatgtagcaagtattgaaca |
6440567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 19 - 405
Target Start/End: Original strand, 360 - 752
Alignment:
| Q |
19 |
ccttcccctggactaagccatttaattccacaagttgaatttgccaaacaattacttcaacatcacaatgaattcattgtcacattcatcattccaacac |
118 |
Q |
| |
|
||||| |||||| | |||||||| |||||||||||||| ||||| |||| |||||| |||||||||||||| | | | |||||||| ||||||| |||| |
|
|
| T |
360 |
ccttcacctggattgagccatttgattccacaagttgagtttgcaaaactattactccaacatcacaatgagtaccatatcacattcctcattcccacac |
459 |
T |
|
| Q |
119 |
tttgtcctcttactccttcaatgcaacaagtcttgaacaatcttccaccaaacatagacttcattcttcttcctcaagtaa------aaaatattcaaca |
212 |
Q |
| |
|
|| |||| || |||||||| |||||| | ||||||||| |||||||||||||| |||||| | ||||||| ||||| | || | ||| ||| |
|
|
| T |
460 |
ttggtccactaactccttccatgcaatcaatcttgaacacacttccaccaaacatgaacttcactgttcttccccaagtcaacattgaagaccttccaca |
559 |
T |
|
| Q |
213 |
aagccatgatcctgcagcacaaatgaaactcattgtgaaacattctattccatttcttcaacaagaagttaaatcactcatttccaaaacttaccttgtt |
312 |
Q |
| |
|
| | ||| ||| || |||||||||||||||| |||||||| ||||||||||||||||| ||||||| |||||||| |||| |||||| |||||||| |
|
|
| T |
560 |
taatcttgaaccttcaacacaaatgaaactcatagtgaaacactctattccatttcttcatgaagaagtaaaatcacttctttcaaaaactaaccttgtt |
659 |
T |
|
| Q |
313 |
tctttaatcttcagtatattttcaacagatgcatatgaagttgctaaacaattcaacttgtcttcttaccttttctatgcctcgggagctgtt |
405 |
Q |
| |
|
||||| | | ||| || |||||||| |||||| | || || |||||||| |||||| | | ||||||||||||| | | || ||||||||| |
|
|
| T |
660 |
gctttagtttgcagcatgttttcaaccgatgcacacgatgtagctaaacatttcaaccttttgtcttaccttttcttttcttcaggagctgtt |
752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 82 - 157
Target Start/End: Complemental strand, 34765317 - 34765242
Alignment:
| Q |
82 |
cacaatgaattcattgtcacattcatcattccaacactttgtcctcttactccttcaatgcaacaagtcttgaaca |
157 |
Q |
| |
|
|||||||| ||||||||||||||| || ||||||||||| |||||| |||| ||||||||| ||| |||||||| |
|
|
| T |
34765317 |
cacaatgagttcattgtcacattcctcgttccaacacttgatcctctcactctttcaatgcatcaaaccttgaaca |
34765242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University